Topic: rna-seq-pipeline Goto Github
Some thing interesting about rna-seq-pipeline
Some thing interesting about rna-seq-pipeline
rna-seq-pipeline,A convenient pipeline for processing of multi-strain bacterial RNA-Seq experiments
User: apredeus
rna-seq-pipeline,Performed a differential gene expression analysis with RNA-seq that compares the expression in human control breast cancer cell lines with lines treated by silencing the NRDE2 gene. A Salmon + tximport + DESeq2 workflow was conducted to pursue this.
User: bissessk
rna-seq-pipeline,A Snakemake pipeline to go from fastq mRNA sequencing files to raw and normalised counts (usable for downstream EDA and differential analysis)
Organization: bleekerlab
Home Page: https://snakemake-rnaseq-pipeline.readthedocs.io/en/latest/
rna-seq-pipeline,GeneFlow is a scalable and flexible software library that encompasses data acquisition methods, preprocessing techniques, data analytics, data visualization, and Machine Learning algorithms that can be applied to genomic data.
User: casillasalba
rna-seq-pipeline,Fast RNAseq pipeline
Organization: cellgeni
rna-seq-pipeline,An Automatic System for RNA-Seq Data Analysis
User: clsteam
Home Page: https://github.com/clsteam/RASER
rna-seq-pipeline,Materials for "Teaching Bioinformatics and R for dataviz course" June-August 2019 in Majorbio
User: czheluo
Home Page: https://czheluo.github.io/Teach-Bioinformatics-R-dataviz/
rna-seq-pipeline,Roddy RNA-seq Workflow Plugin
Organization: dkfz-odcf
rna-seq-pipeline,:microscope: A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data
User: egaffo
rna-seq-pipeline,:whale: Docker image for CirComPara
User: egaffo
rna-seq-pipeline,Some of the analytical processes and tools we use to provide rigorous and actionable results to our clients.
Organization: emoryintegratedcomputationalcore
rna-seq-pipeline, A quick recap of widely used differential analyses methods in R for RNA-seq experiments
User: eonurk
rna-seq-pipeline,In development scripts for EvolOMICs group's NGS Data Analysis Pipeline
User: evolomics-group
Home Page: https://sites.google.com/site/pankajbarah/evolOMICs
rna-seq-pipeline,Deposited R scripts allow to execute a complete RNA-seq Pipeline, starting from sequence reads (FASTQ files) to mapping/annotate the genome using a reference, to counts the number of reads for every gene. when raw counts are obtained, DESeq2 module permits to find differentially expressed genes (DEG) and to perform statistical analysis. The last module of the project allows you to use clusterprofiler in order to perform ORA and GSEA analysis (over-representation analysis and gene set enrichment analysis) using GeneOntology (GO), disease ontology (DO), KEGG, reactome eg...
User: francescopatane96
rna-seq-pipeline,Tool to identify chimeric events from RNA-Seq data
Organization: galantelab
Home Page: https://www.biorxiv.org/content/10.1101/2024.04.22.590610v1
rna-seq-pipeline,Single cell Nanopore sequencing data for Genotype and Phenotype
Organization: gaolabtools
rna-seq-pipeline,RNA seq pipeline designed for paired end reads using HTSEQ for producing files needed for visualizing transcriptomic data with DESEQ2
User: gih0004
rna-seq-pipeline,Automatic RNA-Seq Pipelines with Interactive Report
User: giuliospinozzi
Home Page: http://erc.martellilab.eu
rna-seq-pipeline,Viper is a Snakemake workflow, aimed at performing the RNA-seq workflow of the paper 'Causes and consequences of a glutamine induced normoxic HIF1 activity for the tumor metabolism', Kappler et al. (2019) in a reproducible and automated manner
Organization: grosselab
rna-seq-pipeline,Analyze your RNA sequencing data without writing a single line of code
User: guyteichman
Home Page: https://guyteichman.github.io/RNAlysis/
rna-seq-pipeline,Quality Control, Mapping and Reads Count for RNA-Seq Analysis
User: hanielcedraz
rna-seq-pipeline,Clair3-RNA - a long-read small variant caller for RNA sequencing data
Organization: hku-bal
rna-seq-pipeline,SNP-free RNA editing Identification Toolkit
User: jumphone
Home Page: http://sprint.tianlab.cn/
rna-seq-pipeline,
Organization: lappalainenlab
rna-seq-pipeline,Standard analysis routine for samples that were generated with Lexogen's QuantSeq pool library preparation kit.
Organization: lexogen-tools
Home Page: https://www.lexogen.com
rna-seq-pipeline,SPEAQeasy: portable LIBD RNA-seq pipeline using Nextflow. Check http://research.libd.org/SPEAQeasy-example/ for an example on how to use this pipeline and analyze the resulting output files.
Organization: lieberinstitute
Home Page: http://lieberinstitute.github.io/SPEAQeasy
rna-seq-pipeline,A small python tool for RNA-seq workflows
User: mhjiang97
rna-seq-pipeline,Automatic Packaging and Distribution of Bioinformatics Pipelines
Organization: ncbi-hackathons
rna-seq-pipeline,Snakemake workflow for transposable element RNA-Seq using TEtranscripts
User: niekwit
rna-seq-pipeline,TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly
Organization: palmuc
rna-seq-pipeline,Workflow for de novo transcriptome assemblies from paired-end illumina reads, annotation and quality checks
User: paulars
rna-seq-pipeline,LSTrAP-denovo is an easy-to-use pipeline to assemble and annotate transcripts for species without genome / genomic annotations using publicly available RNA-seq data.
User: pengkenlim
rna-seq-pipeline,Software for intuitively doing Differential Gene Expression (DGE) analysis on Windows and GNU\Linux, based on R packages.
User: pentalpha
Home Page: http://www.bioinformatics-brazil.org/r-peridot
rna-seq-pipeline,The power of the R's differential gene expression analysis packages, with no programming required.
User: pentalpha
Home Page: http://www.bioinformatics-brazil.org/r-peridot
rna-seq-pipeline,Snakemake pipelines for RNA sequencing data
Organization: rnabioco
rna-seq-pipeline,The package mixhvg uses mixture of highly variable gene selection methods to improve gene selection.
User: ruzhangzhao
rna-seq-pipeline,Automated RNA-seq pipeline for lncRNA indentification
User: schosio
rna-seq-pipeline,Pipeline for low-level RNA-Seq data processing
User: scienceforever
rna-seq-pipeline,DEWE (Differential Expression Workflow Executor) is an open source application for easily executing Differential Expression analyses in RNA-Seq data.
Organization: sing-group
Home Page: http://www.sing-group.org/dewe
rna-seq-pipeline,All-in-one analysis pipeline
Organization: taiji-pipeline
Home Page: https://taiji-pipeline.github.io/
rna-seq-pipeline,RNA sequencing pipeline for Stanford's Sherlock HPC cluster
User: tjbencomo
rna-seq-pipeline,QUAlity control for RNA_Seq, a nextflow pipeline
User: tluquez
rna-seq-pipeline,GREIN : GEO RNA-seq Experiments Interactive Navigator
Organization: uc-bd2k
Home Page: https://shiny.ilincs.org/grein
rna-seq-pipeline,GEO RNA-seq Experiments Processing Pipeline
Organization: uc-bd2k
Home Page: https://cran.r-project.org/web/packages/GREP2/index.html
rna-seq-pipeline,Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
User: urmi-21
rna-seq-pipeline,miRPipe: Open source RNA-Seq bioinformatics analysis docker for identification of miRNAs and piRNAs
User: vivekruhela
rna-seq-pipeline,A slurm based pipeline for RNA-seq analysis to execute on linux clusters. Feel free to connect to visualize your RNA-seq data on the clouds
User: vondorishi
rna-seq-pipeline,De nove assembly and annotation of Fragilaria radians transcriptome
User: yuragal
rna-seq-pipeline,Updated version of PAQR, which was previously available in the PAQR_KAPAC joint repository.
Organization: zavolanlab
rna-seq-pipeline,bioinfo workflow based on snakemake
User: zqfang
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