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paulasrs

Personal website of Paula Ramos-Silva

Paula Ramos Silva's Projects

comparative_dge_enrichment icon comparative_dge_enrichment

R scripts and input data for RNAseq differential gene expression without a reference genome from Ramos-Silva, Odendaal et al. 2022

countblasthits icon countblasthits

Retrieves matrix with number of gene/protein hits per query in the blast result. Takes blast tabular file as input.

geomxtools icon geomxtools

Tools for NanoString GeoMx Digital Spatial Profiler data for reading DCC and PKC files to NanoStringGeomxSet class, Normalization and QC.

processcount icon processcount

Prints total gene presences, multi, gains, losses, expansions, contractions per branch/node in the phylogenetic tree resulting from the Count software

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