Topic: kegg Goto Github
Some thing interesting about kegg
Some thing interesting about kegg
kegg,A SWING interface for KEGG metabolic pathways: visualization of metabolical networks
User: alexandrabenamar
kegg,Converting KGML encoded KEGG pathways to the SIF file format
User: arnaudporet
kegg,A Bio2BEL package for integrating pathway-related information from KEGG in BEL
Organization: bio2bel
Home Page: http://bio2bel-kegg.rtfd.io
kegg,KEGG metabolite network canvas based on the d3.js
Organization: biodeep
kegg,Drawing chemical compound structures and glycan structures with capabilities to search against the KEGG databases
Organization: biodeep
kegg,Access to Biological Web Services from Python.
User: cokelaer
Home Page: http://bioservices.readthedocs.io
kegg,Create HMMs from KEGG orthologs
User: ctskennerton
kegg,Research compendium for Viscardi et al, 2020.
Organization: dalmolingroup
kegg,GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF
User: decodebiology
kegg,A Java-based software for visualizing and translating the KEGG PATHWAY database. Conversion of KGML files into BioPAX, SBML, GraphML, GML, and various other formats.
Organization: draeger-lab
kegg,Python package and wrapper around MEGAN6 CE's blast2lca
User: etheleon
Home Page: https://etheleon.github.io/articles/pythonMEGAN/
kegg,Deposited R scripts allow to execute a complete RNA-seq Pipeline, starting from sequence reads (FASTQ files) to mapping/annotate the genome using a reference, to counts the number of reads for every gene. when raw counts are obtained, DESeq2 module permits to find differentially expressed genes (DEG) and to perform statistical analysis. The last module of the project allows you to use clusterprofiler in order to perform ORA and GSEA analysis (over-representation analysis and gene set enrichment analysis) using GeneOntology (GO), disease ontology (DO), KEGG, reactome eg...
User: francescopatane96
kegg,Extract pathways from KEGG database using EC entries.
User: gualapuromoises
kegg,Function Enrichment analysis and Network construction
User: guokai8
Home Page: https://guokai8.github.io/richR/
kegg,Library for KEGG pathway enrichment analysis
User: harryhaller001
Home Page: https://keggtools.org
kegg,Leo is a web-based toolkit for Laboratory of Animal Proteomics in the department of Animal Science, National Chung Hsing University
User: hunglin59638
kegg,An HTML parser for "KEGG Mapper – Reconstruct Result" pages
User: juliemariecharmillon
kegg,metabolomicsDB is a collection of three open-source command-line tools and an API. The tools create a meta-database of HMDB and ChEBI, while the API allows others to read the meta-database and use it on their own projects.
User: klevdiamanti
kegg,Companion repository to the article: "Comparative whole-genome approach to identify bacterial traits for microbial interactions"
User: lucaz88
kegg,KEGG Module Evaluation Tool
User: matteopaluh
kegg,A parallel API crawler for the retrieval of Kyoto Encyclopedia of Genes and Genomes metabolic and genomics data.
User: mentatpsi
kegg,A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries
User: nasqar
Home Page: http://nasqar.abudhabi.nyu.edu/ClusterProfShinyGSEA
kegg,A web-based application to perform Over-Representation Analysis (ORA) using clusterProfiler and shiny R libraries
User: nasqar
Home Page: http://nasqar.abudhabi.nyu.edu/ClusterProfShinyORA
kegg,Command line tool to examine KEGG PATHWAY
User: noriakis
kegg,QIIME 2 plugin for analyzing biological pathway information based on gene family abundances
User: noriakis
Home Page: https://github.com/noriakis/q2-pathway
kegg,Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)
Organization: oss-lab
kegg,PETAL (ParallEl paThways AnaLyzer): a Python tool for deep biological pathway analysis
User: pex2892
kegg,Utilizing graphical neural networks and embeddings on a medical database KEGG to perform link predictions and drug similarity systems.
User: prakhargurawa
kegg,A .NET wrapper for the Kyoto Encyclopedia of Genes and Genomes (KEGG) API.
User: rabadash8820
kegg,Analysis of RNA-seq data using DESeq2
User: shamitashetty
kegg,A command-line interface and biochemical pathway finder based on KEGG
User: shaumik-ashraf
kegg,Python wrapper for ipath3
User: silask
kegg,Auto generated bio-CAD blueprint by Machine Learning
Organization: smrucc
Home Page: http://bioCAD.cloud
kegg,GCModeller Individual Components: GCModeller base core assembly library on common biological database read and write I/O
Organization: smrucc
kegg,Generate Highlighted SVG/PNG for KEGG Pathway
User: suqingdong
kegg,A software for analysis and fast virtual screen of KEGG_DRUG molecular database of accepted drugs classificated by ATC codes
User: tonibois
kegg,A Python script for efficiently retrieving and organizing module-related data from the KEGG database, including entries, symbols, pathway IDs, and names.
User: vsmicrogenomics
kegg,Data toolkits for processing NMR, MALDI MSI, MALDI single cell, Raman Spectroscopy, LC-MS and GC-MS raw data, chemoinformatics data analysis and data visualization.
User: xieguigang
Home Page: https://mzkit.org
kegg,An interactive radial tree for functional hierarchies and omics data visualization
Organization: yamada-lab
Home Page: https://bioviz.tokyo/functree2/
kegg,:bar_chart: A universal enrichment tool for interpreting omics data
Organization: yulab-smu
Home Page: https://yulab-smu.top/biomedical-knowledge-mining-book/
kegg,Command line interface for FuncTree (Deprecated, Experimental)
User: yutayamate
Home Page: https://bioviz.tokyo/functree2/
kegg,A comprehensive gene set function enrichment tool for multiple species.
User: zd105
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