zavolanlab Goto Github PK
Name: Zavolan Lab
Type: Organization
Location: Basel
Blog: https://www.biozentrum.unibas.ch/research/groups-platforms/overview/unit/zavolan/
Name: Zavolan Lab
Type: Organization
Location: Basel
Blog: https://www.biozentrum.unibas.ch/research/groups-platforms/overview/unit/zavolan/
RBP module for bindz, a bioinformatics tool to detect regulators' binding sites on RNA sequences.
Supplementary Materials
Zavolan-Lab repository for CWL Tools and Workflows
Dockerfile repository of the Zavolan Lab
Infer metadata for your downstream analysis straight from your RNA-seq data
Comparative assessment of methods for the computational inference of transcript isoform from RNA-seq data. Submitted to Genome Biology (03-2015).
Zavolab logo
Merge kallisto results from multiple runs
Snakemake workflow for the mapping and quantification of miRNAs and isomiRs from miRNA-Seq libraries.
MIRZA-G - Pipeline and model for miRNA target prediction
Custom plugins for the MultiQC tool.
Oligomap is a program for fast identification of nearly-perfect matches of small RNAs in sequence databases.
Updated version of PAQR, which was previously available in the PAQR_KAPAC joint repository.
scripts, pipelines and documentation to run PAQR and KAPAC; KAPAC allows to infer regulatory sequence motifs implicated in 3’ end processing changes; PAQR enables the quantification of poly(A) site usage from standard RNA-seq data
The repository contains the data related to polyAsite Atlas v3 database and paper
Pipeline for the processing of 3' end sequencing libraries
Toy repository for the Programming for Life Sciences course at the Biozentrum, University of Basel
Prune nh files based on a list of organisms
Workflow for automated (e)CLIP analysis. From raw fastq to peak calling and motif analysis.
Single Cell Identification of Novel PolyA Sites.
The projects implements a simulation of single cell RNA sequencing (scRNA-seq), accounting for some common sources noise that complicate the analysis of the resulting data.
A repository for the tools used by scRNAsim.
Method to detect 3'UTR changes from scRNA-seq
Snakemake example workflow with singularity
A pipeline to discover snoRNA-target chimeric reads in CLIP/HTS experiments.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.