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bclip_stefanie_jonas

bindz-rbp

RBP module for bindz, a bioinformatics tool to detect regulators' binding sites on RNA sequences.

bindz-service

cfi2021

Supplementary Materials

cwl_repository

Zavolan-Lab repository for CWL Tools and Workflows

dockerfiles

Dockerfile repository of the Zavolan Lab

htsinfer

Infer metadata for your downstream analysis straight from your RNA-seq data

ipa-immune

isoformquantificationbenchmarking

Comparative assessment of methods for the computational inference of transcript isoform from RNA-seq data. Submitted to Genome Biology (03-2015).

liver3dculture

logo

Zavolab logo

merge_kallisto

Merge kallisto results from multiple runs

mirflowz

Snakemake workflow for the mapping and quantification of miRNAs and isomiRs from miRNA-Seq libraries.

mirzag

MIRZA-G - Pipeline and model for miRNA target prediction

multiqc-plugins

Custom plugins for the MultiQC tool.

oligomap

Oligomap is a program for fast identification of nearly-perfect matches of small RNAs in sequence databases.

paqr2

Updated version of PAQR, which was previously available in the PAQR_KAPAC joint repository.

paqr_kapac

scripts, pipelines and documentation to run PAQR and KAPAC; KAPAC allows to infer regulatory sequence motifs implicated in 3’ end processing changes; PAQR enables the quantification of poly(A) site usage from standard RNA-seq data

polyasite_atlas_3

The repository contains the data related to polyAsite Atlas v3 database and paper

polyasite_workflow

Pipeline for the processing of 3' end sequencing libraries

programming-for-life-sciences

Toy repository for the Programming for Life Sciences course at the Biozentrum, University of Basel

prune_tree

Prune nh files based on a list of organisms

rcrunch

Workflow for automated (e)CLIP analysis. From raw fastq to peak calling and motif analysis.

scinpas

Single Cell Identification of Novel PolyA Sites.

scrnasim

The projects implements a simulation of single cell RNA sequencing (scRNA-seq), accounting for some common sources noise that complicate the analysis of the resulting data.

scrnasim-toolz

A repository for the tools used by scRNAsim.

scurel

Method to detect 3'UTR changes from scRNA-seq

snakemake_example_workflow

Snakemake example workflow with singularity

snornahybridsearchpipeline

A pipeline to discover snoRNA-target chimeric reads in CLIP/HTS experiments.

splicingreprogramming