Topic: phyloseq Goto Github
Some thing interesting about phyloseq
Some thing interesting about phyloseq
phyloseq,R package for analyzing microbial co-occurences
Organization: almaaslab
phyloseq,Mothur procedures for 16S and ITS analysis
Organization: biocorecrg
phyloseq,The following codes are focused on microbiome analysis, alpha, beta and relative abundance differences.
User: brochado-kith
phyloseq,Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
User: cafferychen777
Home Page: https://www.microbiomestat.wiki/
phyloseq,A model-based visualization method for microbiome data
Organization: centerforstatistics-ugent
phyloseq,Microbial Community Analysis with Chipster
Organization: csc-training
phyloseq,Some of the analytical processes and tools we use to provide rigorous and actionable results to our clients.
Organization: emoryintegratedcomputationalcore
phyloseq,:notebook: Minimal cheatsheet for functions in the phyloseq R package
User: erictleung
phyloseq,:fishing_pole_and_fish: Quick Shiny application to help triage multiple samples from subjects
User: erictleung
phyloseq,En este repositorio se encuentran todos los scripts utilizados para mi tesis de licenciatura, titulada: "Análisis de perfiles funcionales de la microbiota intestinal de pacientes con trastorno depresivo mayor", la cual utiliza un lenguaje de programación en R y Phyton.
User: gabrielatof
phyloseq,Fantaxtic - Nested Bar Plots for Phyloseq Data
User: gmteunisse
phyloseq,A quick and user-friendly pipeline to go from raw fastq data from Illumina (paired-end sequencing) to processed ASVs and Taxonomic data.
User: headonpillow
phyloseq,accessory functions for processing microbial community data
User: itsmisterbrown
phyloseq,An interactive Jupyter-based tutorial prepared for the de los Reyes lab, interested colleagues, and the North Carolina State University BIT 477/577 Metagenomics course
User: joeweaver
phyloseq,This is a 16S amplicon analysis for visualizing microbiome data using QIIME, QIIME2R and Phyloseq. DNA was isolated fom both sediment cores and seabird fecal samples for this analysis.
User: johannabosch
phyloseq,A simple R package to convert MetaPhlAn 4 output profiles to a phyloseq object.
User: jrotzetter
Home Page: https://jrotzetter.github.io/metaphlanToPhyloseq/
phyloseq,Scripts used to analyse metabarcoding data from two different gene regions to assess which provides a more complete picture of the eukaryotic marine microalgae community (EMC).
User: justjaxz
Home Page: http://dx.doi.org/10.1038/s41598-024-56993-4
phyloseq,This repo contains the R microshades package, which contains a color blind accessible color palette with 30 unique colors and functions for applying these colors to microbiome data.
User: karstenslab
Home Page: https://karstenslab.github.io/microshades
phyloseq,Former version of METAPIPE
User: marlaux
phyloseq,Analysis of Salmo trutta gametes and embryo microbiome project in Vals/Trun, Switzerland
User: megaptera-helvetiae
phyloseq,R scripts used for the analysis of microbiomes of nursery-reared Acropora cervicornis
Organization: meyermicrobiolab
phyloseq,R scripts used for the analysis of microbiomes associated with stony coral tissue loss disease (SCTLD) in the Florida Reef Tract
Organization: meyermicrobiolab
phyloseq,dar: runs multiple differential abundance analysis methods and through a consensus strategy returns a set of differentially abundant features.
Organization: microbialgenomics-irsicaixaorg
Home Page: https://microbialgenomics-irsicaixaorg.github.io/dar/
phyloseq,microbiome R package
Organization: microbiome
phyloseq,R scripts used for analysis of data reported in Comparison of Small Gut and Whole Gut Microbiota of First-Degree Relatives with Adult Patients with Celiac Disease and Controls
User: microsud
phyloseq,A selection of analytical approaches, tools, and utilities for the processing of microbiome data derived from either 16S rRNA amplicon sequencing or shotgun metagenomics.
Organization: mucosal-immunology-lab
phyloseq,How to analyze shotgun metagenomic data with phyloseq - a walkthrough
User: mvuko
phyloseq,Analysis for amplicon data
User: natmurad
phyloseq,MSc - 16S sequence datasets, amplicon analysis, and stats
User: nishattasnim11
phyloseq,New to Bioinformatics? Start Here!
User: pjtorres
phyloseq,Dadaist2 🟨 Highway to R
Organization: quadram-institute-bioscience
Home Page: https://quadram-institute-bioscience.github.io/dadaist2/
phyloseq,Analysis scripts, data files and plots used in the manuscript
User: roey-angel
phyloseq,R workflows used to analyze microbial community sequence data
User: sam-koehler
phyloseq,Analysis of 16S rRNA (dada2 amplicon sequence variants) from human volunteers given various vaccines following two different antibiotics treatments compared to no antibiotics.
User: shandley
phyloseq,Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.
User: shandley
phyloseq,A comprehensive and customizable R package for microbiome analysis.
Organization: vallenderlab
Home Page: https://vallenderlab.github.io/MicrobiomeR/
phyloseq,Aplicación en Shiny del proyecto desarrollado en el repositorio Andera de análisis metagenómicos de microbiomas
User: weimar45
phyloseq,Tuberculosis and the microbiome
User: wipperman
Home Page: https://wipperman.github.io/TBRU/
phyloseq,Working Demo on 16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Visit repo website for HTML output
User: ycl6
Home Page: https://ycl6.github.io/16S-Demo/
phyloseq,16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo/
User: ycl6
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