joeweaver Goto Github PK

.my-dotfiles

Attempting to keep my custom settings in sync between machines.

agent_based_biofilm_drift

Code, data, and text supporting a paper about quantifying drift vs selection using an agent-based biofilm model

asmfoam

Github mirror of my bitbucket fork of cdegroot's asmFoam.

asmfoamtests

Github mirror of my bitbucket fork of Chris DeGroot's tests for asmFoam

bioinformatics_tools

Drop off point for any scripts or tools I write as I do bioinformatics work. Some may be half-baked, proceed with caution.

bukubrow-host

Host application for the Bukubrow WebExtension

cbe30338

Chemical Process Control

cet-8-colormaps-for-comsol-tsv-

Creates COMSOL compatible color encodings for the CET perceptually uniform colour maps

cfdpython

A sequence of Jupyter notebooks featuring the "12 Steps to Navier-Stokes" http://lorenabarba.com/

check-dsga

Check a set of downloaded genomes using the ncbi datasets tool for consistency with expected # of sequences and total sequence length. I.E. sanity check against truncated assemblies.

ctb-floc-size-control-analysis

Analysis code and smaller datasets for the paper "Controlling Aerobic Biological Floc Size using Couette Taylor Bioreactors"

get_to_know_phyloseq

An interactive Jupyter-based tutorial prepared for the de los Reyes lab, interested colleagues, and the North Carolina State University BIT 477/577 Metagenomics course

git-filter-repo

Quickly rewrite git repository history (filter-branch replacement)

gitignore

The largest collection of useful .gitignore templates

imglib2

A generic next-generation Java library for image processing

instructor-training

Instructor Training

jekyll-academic

joeweaver.github.io

My website

meshlab

The open source mesh processing system

nufeb

Official release of the NUFEB software

nufeb-dev

NUFEB development repository

nufeb-gui

nufeb-tools

Tooling surrounding NUFEB run generation, management, and postprocessing.

nufebtools

Python package for working with NUFEB simulations

proces_seqs_qiime

Our in-lab shell script used todrive QIIME analyses of sequence data and produce a BIOM and phylo tree

sludge_preprocessing

Collection of scripts to preprocess microphotographs of sludge pictures prior to shap analysis. Mainly median averaging and devignetting.

solidworksmacros

Useful Macros I've written to help me out in Solidworks

sparmoria-sludge-particle-morphological-image-analysis

styles

Official repository for Citation Style Language (CSL) citation styles.

tidysol

TidySOL, a CLI for creating a tidy CSV from exported COMSOL data.