Topic: 10x-genomics Goto Github
Some thing interesting about 10x-genomics
Some thing interesting about 10x-genomics
10x-genomics,CWL toolkit for single-cell sequencing data analysis
Organization: barski-lab
Home Page: https://barski-lab.github.io/sc-seq-analysis/
10x-genomics,Sanger Cellular Genetics single-cell ATAC-seq pipeline.
Organization: cellgeni
10x-genomics,Single-cell preprocessing pipelines, such as converting raw bcl files, make fastqs and then generating quantified matrix, etc
Organization: fanzhanglab
10x-genomics,Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer
User: gavinha
10x-genomics,Non-official Git repository for R package cellrangerRkit (currently not available elsewhere; I'm not affiliated with 10x)
Organization: hb-gitified
Home Page: https://github.com/hb-gitified/cellrangerRkit/issues/4
10x-genomics,Preliminary study to figure out how many larval gonads are needed for RNA-Seq
User: jfear
Home Page: https://jfear.github.io/larval_gonad_docs
10x-genomics,List of tools and resources related to the 10x Genomics GEMCode/Chromium system
User: johandahlberg
10x-genomics,adtseq provides simple Rcpp methods to identify Antibody-Derived-Tags in single cell CITE/REAP-seq data
User: julianspagnuolo
10x-genomics,R package: {rfca} Random forest-based cell annotation methods for scRNAseq analysis. {rfca} contains methods which identifies cell types using machine learning trained on a diversity of cell types, without the need for a labelled training dataset. It also allows you to train your own cell prediction models with your own labels (cell type, subtype, cell state, cluster number etc). This package is best suited for researchers who want to annotate their datasets in a quick and unbiased way, phenotype their datasets based on cell identity proportions, and discover common cell states across different datasets and disease models.
User: kimberle9
Home Page: https://kimberle9.github.io/rfca/articles/vignette.html
10x-genomics,R script built on Seurat objects to analyze 10X single-cell expression data
User: linhtranucla
10x-genomics,simplified cellranger for long-read data
User: mehdiborji
10x-genomics,Standalone tool and library allowing to work with barcoded linked-reads
User: morispi
10x-genomics,De novo assembly pipeline for 10X linked-reads using Supernova
Organization: nf-core
Home Page: https://nf-co.re/neutronstar
10x-genomics,A single-cell RNAseq pipeline for 10X genomics data
Organization: nf-core
Home Page: https://nf-co.re/scrnaseq
10x-genomics,Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.
Organization: nf-core
Home Page: https://nf-co.re/spatialvi
10x-genomics,Collection of tools and resources for linked-reads
User: pontushojer
10x-genomics,Download fastqs or supplementary files from GEO and upload to hca-util bucket
User: rachadele
10x-genomics,Scripts developed to work with 10x Genomics sequencing results
User: rusalkaguy
10x-genomics,
User: smcclatchy
Home Page: https://smcclatchy.github.io/spatial-transcriptomics/
10x-genomics,Paper list of single cell omics
User: tongzhou2017
10x-genomics,Pipeline for SV detection using 10X genomics data
User: vborjesson
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