Topic: dna-sequences Goto Github
Some thing interesting about dna-sequences
Some thing interesting about dna-sequences
dna-sequences,Deep learning for identifying important motifs in DNA sequences. Exploration of the structure of the human genome by training neural network architectures (CNN, LSTM, Attention).
User: asmitapoddar
dna-sequences,Intervene: a tool for intersection and visualization of multiple genomic region and gene sets
User: asntech
Home Page: http://intervene.rtfd.io/
dna-sequences,🍶 Genome assembly with short sequence reads
Organization: bcgsc
dna-sequences,A suite of unique bioinformatics tools for the brave explorer.
Organization: binomica-labs
dna-sequences,Binomica Public Repository for Biological Parts
Organization: binomica-labs
dna-sequences,Fake genomes, fake sequencing, real insights.
Organization: bioinfologics
Home Page: https://bioinfologics.github.io/Pseudoseq.jl/dev
dna-sequences,Sequence alignment tools
Organization: biojulia
dna-sequences,Script for removing or counting invariant sites for the RAxML ascertainment bias corrections
User: btmartin721
dna-sequences,Evolutionary Bioinformatics Toolkit (EBT)
Organization: chasewnelson
dna-sequences,A tool for compression and analysis of DNA sequences
Organization: cobilab
dna-sequences,An improved compression tool for DNA sequences
Organization: cobilab
dna-sequences,An efficient DNA sequence compressor using Neural Networks
Organization: cobilab
dna-sequences,A tool to find and visualize rearrangements in DNA sequences
Organization: cobilab
Home Page: https://github.com/cobilab/smash
dna-sequences,Repository for the paper "Optimal design of stochastic DNA synthesis protocols based on generative sequence models" (Weinstein et al., AISTATS, 2022).
Organization: debbiemarkslab
dna-sequences,A simple yet powerful sequence clustering tool.
Organization: dib-lab
Home Page: https://dib-lab.github.io/kSpider/
dna-sequences,Deep neural networks implemented in TensorFlow & Python for predicting whether transcription factors will bind to given DNA sequences
User: drewwiens
dna-sequences,Read DNA sequences from colourful Microsoft Word documents
Organization: edinburgh-genome-foundry
dna-sequences,:space_invader: Generate identicons for DNA sequences with Python
Organization: edinburgh-genome-foundry
dna-sequences,Pytorch implementation of DeePromoter Active sequence detection for promoter(DNA subsequence regulates transcription initiation of the gene by controlling the binding of RNA polymerase)
User: egochao
dna-sequences,strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.
User: ericarcher
dna-sequences,This application searches inside a text sequence for words that resemble those inside a list of similar words.
User: gagniuc
dna-sequences,This highly visual and responsive VB6 application is an implementation of the global sequence alignment algorithm. It allows the modification of the alignment parameters (match, mismatch, gap), and it shows the pairwise alignment as well as the score matrix in real time.
User: gagniuc
dna-sequences,GraphPart, a data partitioning method for ML on biological sequences
Organization: graph-part
Home Page: https://pypi.org/project/graph-part/
dna-sequences,VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
User: griffan
Home Page: http://griffan.github.io/VerifyBamID/
dna-sequences,This repository contains the python package for Helical
Organization: helicalai
Home Page: https://www.helical-ai.com/
dna-sequences,A method to predict DNA shape features considering farther flanking region.
User: jinsenli
dna-sequences,Python script to quickly extract promoter and terminator regions with the NCBI API. Search for the presence of individual pattern or transcription factor responsive elements with manual sequence (IUPAC) or JASPAR API.
User: jumitti
Home Page: https://tfinder-ipmc.streamlit.app/
dna-sequences,A python wrapper for the benchling api
User: jvrana
Home Page: https://klavinslab.github.io/benchling-api/index
dna-sequences,DNA Motif discovery that includes the discovery of flexible (long or gapped) motifs.
User: kchu25
dna-sequences,Shuffle the string sequences such that the k-mer frequency is preserved in each string
User: kchu25
dna-sequences,This bartender version could handle arbitrary length of barcode
User: laozzzzz
dna-sequences,Visualization of nucleotide alignment algorithms 🧬 DNA sequence as input, best aligning match as output.
User: larapollehn
dna-sequences,genomic alignment similarity search tool
User: laurentnoe
Home Page: https://bioinfo.univ-lille.fr/yass/
dna-sequences,Fast C code for identifying and removing primers and adapters
User: linsalrob
dna-sequences,Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch
User: lucidrains
dna-sequences,memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
User: muellan
dna-sequences,R package to accompany Time Series Analysis and Its Applications: With R Examples -and- Time Series: A Data Analysis Approach Using R
User: nickpoison
dna-sequences,G-BLASTN is a GPU-accelerated nucleotide alignment tool based on the widely used NCBI-BLAST.
User: openhero
dna-sequences,Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.
Organization: plantandfoodresearch
dna-sequences,Tools to work with 23andMe and AncestryDNA raw files
User: plashchynski
dna-sequences,Bioinformatics 2020: Graph Neural Networks for DNA Sequence Classification
Organization: qdata
dna-sequences,DNA Encoder/Decoder For .NET
User: serhiivoznyi
dna-sequences,Find and visualize rearrangements in DNA sequences
User: smortezah
dna-sequences,Simple Python program to perform codon optimization or heterology calculations.
User: tdseher
dna-sequences,
User: teepean
dna-sequences,Web application for designing DNA structures such as DNA origami.
Organization: uc-davis-molecular-computing
Home Page: https://scadnano.org
dna-sequences,Python scripting library for generating designs readable by scadnano.
Organization: uc-davis-molecular-computing
Home Page: https://scadnano.org
dna-sequences,toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files
User: yhoogstrate
dna-sequences,Bioinformatic approach to identify functional transcription factor binding motifs
User: zeyang-shen
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