Topic: contamination Goto Github
Some thing interesting about contamination
Some thing interesting about contamination
contamination,DecontaMiner is a tool designed and developed to investigate the presence of contaminating sequences in unmapped NGS data. It can suggest the presence of contaminating organisms in sequenced samples, that might derive either from laboratory contamination or from their biological source, and in both cases can be considered as worthy of further investigation and experimental validation. The novelty of DecontaMiner is mainly represented by its easy integration with the standard procedures of NGS data analysis, while providing a complete, reliable, and automatic pipeline. https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2684-x
User: amarinderthind
Home Page: http://www-labgtp.na.icar.cnr.it/decontaminer/
contamination,Rapid and simple taxonomic profiling of genome and metagenome contigs
User: arkadiy-garber
contamination,Reference-based, heuristic algorithm for identification of potential contaminants in mothur-formatted OTU tables
User: arkadiy-garber
contamination,Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data
User: benjjneb
Home Page: https://benjjneb.github.io/decontam/
contamination,🗑️🦷 decOM 🦷🗑️
User: camiladuitama
contamination,Tumour-in-Normal Contamination assessment with evolutionary theory.
Organization: caravagnalab
Home Page: https://caravagnalab.github.io/TINC
contamination,Analytical solution for Contaminant Transport in Groundwater
User: cjbarry
contamination,RawHash is the first mechanism that can accurately and efficiently map raw nanopore signals to large reference genomes (e.g., a human reference genome) in real-time without using powerful computational resources (e.g., GPUs). Described by Firtina et al. (published at https://academic.oup.com/bioinformatics/article/39/Supplement_1/i297/7210440)
Organization: cmu-safari
Home Page: https://academic.oup.com/bioinformatics/article/39/Supplement_1/i297/7210440
contamination,Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
User: drl
contamination,Conta is an R package to detect cross contamination and source of contamination
Organization: grailbio
contamination,VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
User: griffan
Home Page: http://griffan.github.io/VerifyBamID/
contamination,This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to provide contaminant protein FASTA and spectral libraries that can be universally applied to DDA and DIA proteomics and freely accessible for the proteomics community.
Organization: haogroup-protcontlib
contamination,The LM Contamination Index is a manually created database of contamination evidences for LMs.
Organization: hitz-zentroa
Home Page: https://hitz-zentroa.github.io/lm-contamination/
contamination,Module and script to remove contamination in assembled genomes before submission to ncbi
User: htafer
contamination,Nextflow pipeline for Conpair (concordance and contamination estimator)
Organization: iarcbioinfo
contamination,Escape if you can! A radiological event has occurred and you have to find your way out. Pick up items along the way that may help or harm you. When you've accumulate too much radiation it's game over.
User: jason-hargrove
Home Page: https://accumulative-dose.herokuapp.com/
contamination,Python based machine-learning scripts that generate real-time predictions of the water quality on the shores of the larger Montreal island for the water activities aficionados The predictions are displayed online interactively on an OpenShift server built with the LAMP stack.
User: jeremieauger
contamination,Automated pipeline for HGT and contaminant detection in an assembled, annotated genome
User: jnarayan81
contamination,autoConTAMPR: Automatic Contingency Table Analysis of Minority Peak Ranks
User: jnarayan81
contamination,cross-contamination of plant virus base on read assignation
User: johrollin
contamination,Recentrifuge: robust comparative analysis and contamination removal for metagenomics
User: khyox
Home Page: http://www.recentrifuge.org
contamination,Analytical solutions for groundwater contaminant transport
Organization: madsjulia
Home Page: http://mads.gitlab.io
contamination,Module simulating groundwater flow and contaminant transport in multiple groundwater zones (saturated and unsaturated)
Organization: madsjulia
Home Page: http://mads.gitlab.io
contamination,Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification
User: mbhall88
Home Page: https://doi.org/10.1093/gigascience/giae010
contamination,Remove human reads from a sequencing run
User: mbhall88
contamination,Parameter estimation of seeding and contamination rates on a triangular lattice using the method of simulated moments (MSM).
User: melykuti
Home Page: https://doi.org/10.1080/17442508.2018.1539089
contamination,A platform that enables users to perform private benchmarking of machine learning models. The platform facilitates the evaluation of models based on different trust levels between the model owners and the dataset owners.
Organization: microsoft
contamination,Consensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria
Organization: mpieva
contamination,Contamination detection workflow based on mtDNA
Organization: mtdna
contamination,Shiny app for calculating & plotting data for UCL's and MK Trends
Organization: open-stats-online
Home Page: https://open-stats-online.github.io/openucl_02/
contamination,Repositorio para análisis y publicación de datos de contaminación en Andalucía
User: oslugr
contamination,Codes for a geoSpatial Decision Support Systems (S-DSS) for sustainable land use. Article published in Land Degradation & Development (2024)
User: pemori
Home Page: https://doi.org/10.1002/ldr.5008
contamination,GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and metadata with focus on contamination detection.
User: pirovc
Home Page: https://pirovc.github.io/grimer/
contamination,A Nextflow pipeline for evaluating assembly quality
Organization: plant-food-research-open
Home Page: https://plant-food-research-open.github.io/assemblyqc/
contamination,Godot educational game about oceans.
User: pudindeveloper
Home Page: https://sea-sweepers.pudin.net/
contamination,An open-source R package containing decontamination pipelines for low-biomass microbiome data
User: rachelgriffard
contamination,MitoSIS (Mitochondrial Species Identification System) is a wrapper for mitochondrial genome assembly and identification of sample contamination or mislabeling.
User: rhettrautsaw
contamination,mtDNA Variant Caller
User: seppinho
Home Page: https://mutserve.vercel.app
contamination,Detecting contamination in NGS data and multi-species analysis
User: stevenwingett
Home Page: https://stevenwingett.github.io/FastQ-Screen/
contamination,Water quality monitoring in river for pollution control applicating continuous conductivity monitoring. This is for evaluation of pollution level and its fluctuation as BOD5 converting by Conductivity value utilizing Arduino Nano.
User: takashinedachi
contamination,[IEEE ICASSP 2023] "Robust Subspace Tracking with Contamination Mitigation via Alpha-Divergence". In 48th IEEE International Conference on Acoustics, Speech, & Signal Processing, 2023.
User: thanhtbt
Home Page: https://ieeexplore.ieee.org/document/10094931
contamination,R codes developed for East Chicago PCB soil paper. Codes describe how to create the maps and figures (ECSoilFigures.R), as well as all the statistical analyses (ECSoilStatTest.R) performed in the paper. All data are available and download from Pangaea. This is part of Project 6 of the ISRP (https://iowasuperfund.uiowa.edu/)
User: valdiman
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