drl Goto Github PK
Name: Dominik R Laetsch
Type: User
Company: Institute of Evolutionary Biology, University of Edinburgh
Location: Edinburgh, UK
Blog: https://scholar.google.com/citations?user=Tig44r4AAAAJ
Dominik R Laetsch's Projects
acc2fasta
Perl script that takes in a list of accession numbers (TXT, CSV) and fetches the fasta files from genbank
anisakis
bioinformatic_tools
random tools
blast4tagc_experiment
testing different algorithms for tagc
blastnbury
Perl script for performing remote BLAST searches, selecting manually best hits and storing the in CSV format
blobtools
Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
blobtools-light
Light version blobtools package - NO LONGER MAINTAINED! DO NOT USE!
blobtools_manuscript
Data for the BlobTools manuscript
blocktools
bSFS-based analysis toolkit
cactus
Official home of genome aligner based upon notion of Cactus graphs
chow2018
Data files associated with Chow et al., 2018
datatoolkit
General tools for genomics
dombadom
A website
drl.github.io
egg_hunt
Burrowing beetle image processing
exonerate_gff_to_fasta
farrago
A collection of bioinformatic tools
fastats
Fasta statistics
find_proteins_in_genomes
Finding effectors in genomes based on tblastn output
geneps
Gene positioning system
genomebiology2016_globodera_rostochiensis
Scripts used in "The genome of the yellow potato cyst nematode, Globoderia rostochiensis, reveals insights into the bases of parasitism and virulence"
gff_scripts
Scripts for dealing with GFF files
gimble
A genome-wide IM blockwise likelihood estimation toolkit
hox
hoxpipe
a work in progress
kinfin
Taxon-aware analysis of clustered protein sequences
kinfin_manuscript
Data for the KinFin manuscript
kmer
laetsch2010
The Anguillicolidae (Nematoda: Anguillicoloidea): Barcoding, population structures and phylogenetics
mackintosh2019
The determinants of genetic diversity in butterflies – Lewontin's paradox revisited
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