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QData's Projects

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NeurIPS17: [AttentiveChrome] Attend and Predict: Using Deep Attention Model to Understand Gene Regulation by Selective Attention on Chromatin

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General Multi-label Image Classification with Transformers

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Bioinformatics 2020: Graph Neural Networks for DNA Sequence Classification

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https://qdata.github.io/deep2Read/ This website includes a (growing) list of papers and lectures we read on deep learning and related.

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Deep Reinforcement Learning for Continuous Control in Pytorch

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Bioinformatics16: DeepChrome: Deep-learning for predicting gene expression from histone modifications

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ICLR16: DeepCloak: Masking Deep Neural Network Models for Robustness Against Adversarial Samples

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"DeepDiff: Deep-learning for predicting Differential gene expression from histone modifications", Bioinformatics, Volume 34, Issue 17,

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Deep Motif (ICLR16)/ Deep Motif Dashboard (PSB17): Visualizing Genomic Sequence Classifications

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Motif Transformers for Predicting Protein-Protein Interactions Between a Novel Virus and Humans

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CodeBase for Paper: "Black-box Generation of Adversarial Text Sequences to Evade Deep Learning Classifiers", / Interactive Demo @

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AISTAT2018: Fast and Scalable Learning of Sparse Changes in High-Dimensional Gaussian Graphical Model Structure

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A version of the DeepMind Control Suite with randomly generated graphics, for measuring visual generalization in continuous control.

evademl icon evademl

An evolutionary framework for evading machine learning-based malware classifiers.

evademl-zoo icon evademl-zoo

Benchmarking and Visualization Tool for Adversarial Machine Learning

fasjem icon fasjem

AISTAT 2017 Paper: A Fast and Scalable Joint Estimator for Learning Multiple Related Sparse Gaussian Graphical Models

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Bioinformatics 2020: FastSK: Fast and Accurate Sequence Classification by making gkm-svm faster and scalable. https://fastsk.readthedocs.io/en/master/

gakco-svm icon gakco-svm

ECML16: GaKCo: a Fast Gapped k-mer string Kernel using Counting

jeek icon jeek

ICML18: JEEK - Fast and Scalable Joint Estimator for Integrating Additional Knowledge in Learning Multiple Related Sparse Gaussian Graphical Models

jointnets icon jointnets

JointNets: an end-to-end R package for sparse high-dimensional Gaussian graphical model estimation, visualization, simulation and evaluation.

lamp icon lamp

ECML 2019: Graph Neural Networks for Multi-Label Classification

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