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Name: Tyler Chafin
Type: User
Company: Wellcome Sanger Institute
Bio: Senior Bioinformatician | Sanger ToL
Location: Cambridge, UK
Name: Tyler Chafin
Type: User
Company: Wellcome Sanger Institute
Bio: Senior Bioinformatician | Sanger ToL
Location: Cambridge, UK
A pipeline that accepts a VCF file to run through Admixture
Classifying sex-linked and autosomal scaffolds using allele-depth ratios computed from pileup data
Data and scripts from Douglas et al. Mar. Ecol.
Perl script to convert from the .alleles format created by pyRAD to a 'tag haplotype' matrix for input to fineRADstructure
Detecting the anomaly zone in trees - modified from Linkem et al 2016
Stream trees for SNP datasets
Python code for automatically tuning mixing parameters in BayesAss3
Modification of BayesAss 3.0.4 to allow handling of large SNP datasets
This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html
Benchmark Dataset Evaluation & COmparison of Nifty, Versatile, Objective Lineage-Unscrambling-Tool Execution
Digitizing CMM Arm for importing features and point cloud data. Original concept and source code by DZL.
Plot Genomic Clines from BGC and INTROGRESS and Correlate with Environental Variables
CoalHMM - porting to python 3
Repository for the Spring 2018 course in Conservation Genetics (BIOL-5174) at the University of Arkansas
Repository for designing our RAD and UCE adapters.
Python tools for ecological data analyses
Random parsers for automating terrible lab-specific tasks for the Douglas Lab at University of Arkansas. Mostly saved here so I can reference them later. They are NOT written to be user-friendly, nor is any documentation provided.
Parsimonious delimitation of large SNP datasets using the four gamete test
File conversion scripts for DNA sequence data
A Java implementation of "Flappy Bird" which I have modified according to my own tastes. This was my first Java project (ever)- so if you decide to take a look at this code and have any pointers, feel free to send them my way
A version of my Java "Floppy Birb" game which implements a recursive AI to play the game for you
Simple program for in silico restriction digest of genomic sequences, to simulate RAD-family NGS library prep methods
Depth-weighted De-Mixing
Snakemake workflow for detecting genetics variants (snp, indels, and structural variants) in cell populations
This Nextflow DSL2 pipeline takes aligned HiC reads, creates contact maps and a table of statistics.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.