emilhaegglund Goto Github PK
Name: Emil Hägglund
Type: User
Company: ICM, Uppsala University
Bio: Phd-student in bioinformatics at ICM, Uppsala University, studying bacterial genomics and evolution.
Location: Uppsala
Name: Emil Hägglund
Type: User
Company: ICM, Uppsala University
Bio: Phd-student in bioinformatics at ICM, Uppsala University, studying bacterial genomics and evolution.
Location: Uppsala
Conda recipes for the bioconda channel.
A mix of scripts.
A hierarchical genotype classifier of clonal pathogens
MGnify API toolkit
Collection of scripts for preparing tree-files for FigTree
Download genome data from NCBI using taxonomic id
A conda-smithy repository for jsonapi-client.
Linux code distribution for minUP
Large scale Blast Score Ratio (BSR) analysis
Nanopore sequence read simulator
Run kraken in Docker using locally basecalled sequences from MinION.
Accurate inference of orthologous gene groups made easy. "OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthologous gene group inference accuracy"
a toolkit for working with Oxford nanopore data
Jupyter Notebook for Introduction to Programming, Bioinformatic Analyses 1
A tool for conversion from assorted NCBI Accessions to NCBI Taxonomy IDs
Scripts for implementing read until and other examples.
Assembly and scaffolding of bacterial genomes in real time using MinION-sequencing
This repo is for demonstration purposes only.
A Snakemake-workflow to sample taxa from sequence databases based on taxonomical or phylogenetic information
Python tool to reduce size and redundancy of phylogenetic datasets
Whole genome focused array SNP typer
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.