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bioconda-recipes

Conda recipes for the bioconda channel.

bodscore

Scoring method for identified SNPs

cibiv-beamer-template

CIBIV latex beamer template base on mtheme (https://github.com/matze/mtheme)

cibiv.github.io

CIBIV website

evonaps

EvoNAPS is a database providing input parameter settings for extensive sequence simulations to be used in phylogenetic studies.

gwpcr

Corrects UMI-based NGS data for phantom UMIs and lost molecules using a mechanistic model of UMI-based experiments

ipoolseq-pipeline

A pipeline for the analysis of iPool-Seq data

iq-tree

Efficient phylogenomic software by maximum likelihood

modelrevelator

nextgenmap

NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms while still outperforming them in terms of runtime. This allows analysing large scale datasets even with increased SNP rates or higher error rates (e.g. caused by specialized experimental protocols) and avoids biases caused by highly variable regions in the genome.

pda

Phylogenetic Diversity Analyzer

py-remoter

Task queue which keeps tracks of jobs and their exit status

pyrganoid

sanjar

Simulates the deterministic and stochastic versions of the SAN model

teaser

A tool to benchmark mappers and different parameters within minutes

trumicount

Correctly counting molecules using unique molecular identifiers (UMIs)

umi-tools

Tools for handling Unique Molecular Identifiers in NGS data sets

zone-net

Neural Network predicting if the underlying tree of a given MSA is a Farris- or Felsenstein-like tree