Nick Semenkovich's Projects
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
Intune-deployed Powershell configuration for Azure Active Directory-joined machines with OneDrive folder redirection.
Aldine Travel website.
Conda recipes for the bioconda channel.
BISulfite-seq CUI Toolkit
A tool to map bisulfite converted sequence reads and determine cytosine methylation states
A quick overhaul of CelFiE — cfDNA cell type of origin estimation
A Chrome extension to force PDFs to render inline (overrides Content-Disposition: attachment).
Persistent cookies are annoying. This Chrome extension limits cookie lifetime to a user-adjustable value.
Persistent history entries are annoying. This Chrome extension limits history entries to a user-adjustable value.
A Chrome Extension to monitor Google Wifi (or OnHub) status.
A fork of Bas Dutilh's crAss project, with RPKM support.
Refreshed personal dotfiles.
EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
A quick tool to: freeze a Flask app, minify content, and push to an AWS S3 bucket.
Wrapper script for Gordon Lab pipelines to ensure git repo is up to date.
Warn Google Apps users if they have messages that may be deleted by a mail retention policy.
Mass spec partial isotopic enrichment predictions using isodist.
Scrape and print both inbound & outbound faxes.
Visualize the 93-genome collection ("100 genomes") and programmatically retrieve gene calls & other info.
Nagarajan miRNA Project
Aggregate results from bioinformatics analyses across many samples into a single report.
Predict crosslinked peptide or protein masses given a crosslinker and digestion enzyme.
A repository full of Pynecone example apps.
🛠 Python project template generator with batteries included
Template repository for Python projects