wglab Goto Github PK

ampbinner

A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data

analysiskge

Some papers on Knowledge Graph Embedding(KGE)

asd-terminology

asd_terminology

baifw_2019_class

bibm2017-workshop

Home page for the "Translational Bioinformatics in Precision Medicine" workshop in BIBM2017

biocluster

Tutorial on building a computing cluster for bioinformatics

bioformer

Bioformer: an efficient BERT model for biomedical text mining

cancervar

Clinical interpretation of somatic mutations in cancer

contextsv

An alignment-based, generalized structural variant caller for long-read sequencing/mapping data

deepmod

DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications

deepmod2

DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads

deeprepeat

An accurate repeat detection from Nanopore data using deep learning and image techniques

delongseq

doc-annovar

Documentation for the ANNOVAR software

down-syndrome-analysis

Cluster the NERs from Down Syndrome Patients

dragonstar2019

ehr-phenolyzer

A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list

enhancedfalcon

FALCON: experimental PacBio diploid assembler

enlight

Web server for epigenetic annotation of genetic variants

epilepsy-autism-multiplex-network

falcon-integrate

Build and integration- testing for FALCON

gdnnp-visualization

Repository to host the visualizations for iCAGES

gdp

Group lasso based Deep Neural Network for Cancer Prognosis

gene-fusion-detection-pipeline-lrs

The Gene Fusion (GF) Detection Pipeline is comprehensive bioinformatics workflow designed for Oxford Nanopore long-read sequencing data.

gengen

A set of software tools to facilitate GWAS analysis

gestaltmml

hadoopcnv

HadoopCNV is a MapReduce-based copy number variation caller for genome sequencing data

htt-snp-phasing

icages

iCAGES (integrated CAncer GEnome Score) is an effective tool for prioritizing cancer driver genes for a patient