ibn-salem Goto Github PK

aalbi

Advanced algorithms in bioinformatics

chromint

cohesinko

demopkg

What the Package Does (One Line, Title Case)

genepair

Functions to Analyse Pairs of Genomic Elements like Genes.

genepairreg

grb_interactions

Chromatin interaction of CNEs with target and bystander genes in GRBs

gutdev

hyperbolic_nucleus

Analysing chromatin-chromatin interaction networks in hyperbolic space

mll-transloc

Analysing MLL translocations with cromatin interaction data

molnetb

ngscheckmate

Software program for checking sample matching for NGS data

numsys_bifurcation

Numerical Systems Biology: Bifurcation talk

paralog_regulation

Co-regulation analysis of duplicated gene pairs with respect to the three-dimensional chromatin architecture as reveald by Hi-C data.

position_effect

Prediction of Position Effects of Apparently Balanced Human Chromosome Rearrangements

ppigenomics

Analyse genomic distribution of gene pairs that encode for proteins with direct protein-protein interactinos (PPI)

read_counter_htseq

Counts paired-end fragments from SAM/BAM files for defined input regions

sevenc

7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs

sevenc_analysis

Prediction performance analysis of the sevenC package

tad_disease_genes

Analyis of TADs by number of disease genes and pathogenic structural variations

tad_gene_function

Analysis of common gene functions within topologically associating domains

telomere_genes

thesis

My PhD thesis on genome folding in evolution and disease