Topic: gff3 Goto Github
Some thing interesting about gff3
Some thing interesting about gff3
gff3,cool BED-to-GFF3 converter that runs in parallel
User: alejandrogzi
gff3,EMBLish aims to provide a tool for converting gene prediction files such as Maker output file and gene annotation files such as Pannzer2 output file into the EMBL format
User: axelgiottonini
gff3,Genomic linked data converter. Interchange GFF, GVF, VCF files via JSON.
Organization: biointerchange
gff3,Home of the Genomic Feature and Variation Ontology (GFVO)
Organization: biointerchange
Home Page: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4435477/
gff3,
Organization: biojulia
gff3,A Python package for Biopython that gives feature annotations from GenBank records a new and better life
Organization: biosustain
Home Page: https://biosustain.github.io/goodbye-genbank/
gff3,Archive of personal scripts repository from my various projects in the Buell Lab at MSU (Jan. 2008 - Apr. 2011)
User: brettwhitty
gff3,A tool to aggregate and load TB data to Neo4j
Organization: combat-tb
gff3,Tools for importing GFF files to a Neo4J graph database
Organization: corwur
gff3,C# web tool for reading GFF3 files, filtering, ordering, extracting information into Excel, GFF3 files, CDS files, and comparing GFF3 data with FASTA and CDS files.
User: dariscappelletti
Home Page: https://gff3tools.dariscappelletti.com
gff3,This code counts the mapped nucleotide number in given SAM file according to given GFF file.
User: erkinacar5
gff3,parse GFF and output a CSV file for gggenes. 解析并将 gff 中需要的内容输出到 csv 文件中以供 R 包 gggenes 调用。
User: flyingicedragon
gff3,Gff-toolbox is a toolbox of commands that enables one to get the gist of their GFF annotation files, as well as to analyse them in different ways.
User: fmalmeida
Home Page: https://github.com/fmalmeida/gff-toolbox/wiki
gff3,GenomeTools genome analysis system.
Organization: genometools
Home Page: http://genometools.org
gff3,read VCF and select synonymous or non-synonymous coding variants
User: grelot
gff3,Extracts information from GFF and prepare them in bed format
User: hassanfa
gff3,Scripts to index and align Bovine genome with HISAT2
User: hernanmd
gff3,Toolkit for handling genome annotations in various formats. Python3.
User: holmrenser
gff3,A web application for interactive visualization and exploratory data analysis of variant call matrices
Organization: ipk-bit
Home Page: https://divbrowse.ipk-gatersleben.de
gff3,Converts the string output of BPROM, a promoter prediction software tool, to the GFF3 file format. Used in a CPT Galaxy phage genomics workflow
User: jakechamblee
gff3,A web UI for the fungal version of antiSMASH.
User: kblin
gff3,final project of the advanced programming classes, course of Genomics bachelor degree - UniBo.
User: kcajj
gff3,A genome visualization python package for comparative genomics
User: moshi4
Home Page: https://moshi4.github.io/pyGenomeViz
gff3,The AgBioData GFF3 working group has developed recommendations to solve common problems in the GFF3 format. We suggest improvements for each of the GFF3 fields, as well as the special cases of modeling functional annotations, and standard protein-coding genes. We welcome discussion of these recommendations from the larger community.
Organization: nal-i5k
gff3,Python programs for processing GFF3 files
Organization: nal-i5k
gff3,An efficient way to convert gff3 annotation files into EMBL format ready to submit.
Organization: nbisweden
gff3,Convert sequence IDs between ucsc/refseq/genbank
Organization: ncbi-hackathons
gff3,A little script to print a gff3 file
User: pguenzi-tiberi
gff3,💻 Interconverting FASTA, GFF, and CSV.
Organization: scbirlab
Home Page: https://bioino.readthedocs.io
gff3,Genome annotation data analysis and management implemented in pure Python
User: standage
Home Page: http://tag.readthedocs.io
gff3,Tools for querying and analysis of genomic data
User: tjparnell
Home Page: http://tjparnell.github.io/biotoolbox/
gff3,JSON-based FON (Feature Object Notation) format and tools to simplify genomic annotations usage
User: vejnar
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