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rare case of a vet turned bioinformatician interested in multi-omics, cancer and open-source software.

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Alejandro Gonzales-Irribarren's Projects

bed2gff icon bed2gff

BED-to-GFF3 converter that runs in parallel

bed2gtf icon bed2gtf

A high-performance BED-to-GTF converter written in Rust

gtfsort icon gtfsort

A chr/pos/feature GTF sorter that uses a lexicographically-based index ordering algorithm.

gxf2bed icon gxf2bed

Fastest GTF/GFF-to-BED converter chilling around

modules icon modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

noel icon noel

GTF/GFF per gene non-overlapping exon length calculator

stoseq icon stoseq

A portable storage-optimized RNA-seq processing pipeline

thermut icon thermut

Data processing and pipeline for "The role of the thermodynamic pressure in Lensky's long-term evolution experiment"

to-trans icon to-trans

A high-performance exon/CDS spliced transcriptome builder from fasta + GTF/GFF

toga icon toga

TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.

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