Alejandro Gonzales-Irribarren's Projects
My personal webpage
BED-to-GFF3 converter that runs in parallel
A high-performance BED-to-GTF converter written in Rust
Conda recipes for the bioconda channel.
chainify your work!
A chr/pos/feature GTF sorter that uses a lexicographically-based index ordering algorithm.
Fastest GTF/GFF-to-BED converter chilling around
Everything in .chrom from GTF/GFF
Repository to host tool-specific module files for the Nextflow DSL2 community!
GTF/GFF per gene non-overlapping exon length calculator
A custom viral discovery pipeline from avian-virus samples for the PA lab
The post-TOGA processing pipeline
A portable storage-optimized RNA-seq processing pipeline
Data processing and pipeline for "The role of the thermodynamic pressure in Lensky's long-term evolution experiment"
A high-performance exon/CDS spliced transcriptome builder from fasta + GTF/GFF
TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.