vejnar Goto Github PK

apptainer

Apptainer: Application containers for Linux

bowtie2

A fast and sensitive gapped read aligner

chromap

Fast alignment and preprocessing of chromatin profiles

chromosomemappings

This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.

deque

Fast ring-buffer deque (double-ended queue)

failing-disk-reporter

Failing Disk Reporter (FDR): Get a report when a drive (HDD or SDD) is failing via Matrix or Slack. MIRROR

fontools

JSON-based FON (Feature Object Notation) format and tools to simplify genomic annotations usage

geneabacus

Counts and profiles sequencing reads within genes, chromosomes or constructs.

geneabacus-python

Python IO functions for GeneAbacus

hts

biogo high throughput sequencing repository

labxdb

Versatile databases for genomic sequencing and lab management

labxdb-tools

This is a mirror for LabxDB tools. Issues and PRs on GitLab.

labxpipe

Genomics pipelines

lego

Let's Encrypt client and ACME library written in Go

minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences

mirmap

Comprehensive prediction of microRNA target repression strength

mirmap1

Comprehensive prediction of microRNA target repression strength

notebooks

My Jupyter Notebooks

nwalgo

Needleman-Wunsch Alignment in Go

paru

Feature packed AUR helper

pyfnutils

Small utility functions for Python: logging, parallel tasks, zstd

rappdirs

Find OS-specific directories to store data, caches, and logs. A port of python's AppDirs

readknead

Knead your sequencing reads before baking: clips, demultiplexes, filters and trims reads

sensoralarmchart

Tracks Bluetooth Low Energy (BLE) sensors like Freezer Temperature. Sends alarms on Slack or Matrix. Install on Raspberry Pi.

skewer

starcode

All pairs search and sequence clustering

zstd

Zstandard - Fast real-time compression algorithm