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cortex

reference free variant assembly

covariants

Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.

coverm

Read coverage calculator for metagenomics

covid-19

Data analysis and visualizations of daily COVID cases report

covid-19-data

Data on COVID-19 (coronavirus) confirmed cases, deaths, and tests • All countries • Updated daily by Our World in Data

covid-19-widget

Terms and reference files for COVID-19 Widget

covid19

Unified dataset for a better understanding of COVID-19

covizu

Rapid analysis and visualization of coronavirus genome variation

cpu-x

CPU-X is a Free software that gathers information on CPU, motherboard and more

crispresso2

Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments

cromwell

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

crossmap

CrossMap is a python program to lift over genome coordinates from one genome version to another.

csbfinder

A Java Desktop application with a graphical user interface for the discovery of colinear syntenic blocks across thousands microbial genomes

cudatext

Cross-platform text editor, written in Lazarus

cufflinks

cutadapt

Cutadapt removes adapter sequences from sequencing reads

cutesv

Long read based human genomic structural variation detection with cuteSV

cwltool

Common Workflow Language reference implementation

cyntenator

Cyntenator is a software for identification of conserved syntenic blocks between multiple genomes.

cytoscape

Cytoscape: an open source platform for network analysis and visualization

cytotree

A Toolkit for Construct Tree-shaped Trajectory for Flow and Mass Cytometry data

dada2

Accurate sample inference from amplicon data with single nucleotide resolution

dagr

A scala based DSL and framework for writing and executing bioinformatics pipelines as Directed Acyclic GRaphs

dataease

人人可用的开源数据可视化分析工具。

datahub

A centralized location for storing curated data ready for inclusion in cBioPortal.

dbsnp

dbSNP

dcc

DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies a series of filters and integrates data across replicate sets to arrive at a precise list of circRNA candidates.

debreak

Structural variant caller for real-time long-read sequencing data

decon

DECoN (Detection of Exon Copy Number) is a sensitive and specific tool for detection of exon copy number variants (exon CNVs) in targeted sequencing data.

deconstructsigs

deconstructSigs