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shadowsocksr

Python port of ShadowsocksR

shadowsocksr-1

Python port of ShadowsocksR

shadowsocksr-android

A ShadowsocksR client for Android

shadowsocksr-android-1

A ShadowsocksR client for Android

shadowsocksr-csharp

shadowsocksr-csharp-1

shadowsocksx-ng

Next Generation of ShadowsocksX

sharpcompress

SharpCompress is a fully managed C# library to deal with many compression types and formats.

shoot

SHOOT.bio - the phylogenetic search engine

shotcut

cross-platform (Qt), open-source (GPLv3) video editor

showtree

showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.

sibelia

Genome comparison via de Bruijn graph. To get the latest stable version, please visit our site.

sibeliaz

A fast whole-genome aligner based on de Bruijn graphs

sickle

Windowed Adaptive Trimming for fastq files using quality

sift4g

Sorting Intolerant From Tolerant For Genomes

sift4g_annotator

Annotating VCF files using the SIFT4G databases

sift4g_create_genomic_db

Create genomic databases with SIFT predictions. Input is an organism's genomic DNA (.fa) file and the gene annotation file (.gtf). Output will be a database that can be used with SIFT4G_Annotator.jar to annotate VCF files.

singularity

Singularity: Application containers for Linux

skittle

DNASkittle is a web based genome browser that provides an interactive visualization of the raw sequence. Every nucleotide of 10Kbp can fit on one screen at a time. It makes heavy use of signal processing techniques to extract tandem repeats, and other genome elements.

skylinetools

Utilities and distributions for (birth-death) skyline models.

slimsuite

Open source short linear motif discovery and sequence analysis

slivar

variant expressions, annotation, and filtering for great good.

sma3s

Sma3s (Sequence massive annotator using 3 modules) - annotate complete proteomes & transcriptomes

smartdenovo

Ultra-fast de novo assembler using long noisy reads

smoothxg-pan

linearize and simplify variation graphs using blocked partial order alignment

smoove

structural variant calling and genotyping with existing tools, but, smoothly.

snakemake

This is the development home of the workflow management system Snakemake. For general information, see

snap

SN Application Proxy

snap-1

Gene prediction software

sniffles

Structural variation caller using third generation sequencing