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facets

Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.

fakelocation

修改定位,虚拟定位,打卡神器, 钉钉打卡,微信打卡,fake location,virtual location, location change, dingding,dd, weixin

falkon

Cross-platform Qt-based web browser

famsa

Algorithm for large-scale multiple sequence alignments (400k proteins in 2 hours and 8GB of RAM)

fasconcat

FASconCAT is a user-friendly software that concatenates rapidly different kinds of sequence data into one supermatrix file. Output files are either in FASTA, PHYLIP or NEXUS format and are directly loadable in phylogenetic programs like PAUP*, RAxML or MrBayes. FASconCAT can handle FASTA, PHYLIP and CLUSTAL formatted input files in one single run. It provides useful information about each input file and the concatenated supermatrix.

fasconcat-g

FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignment files for phylogenetic and population genetic purposes. The main options include sequence renaming, file format conversion, sequence translation, consensus generation of predefined sequence blocks, and RY coding as well as site exclusions in nucleotide sequences. FASconCAT-G implemented process options can be invoked in any combination and performed during a single process run. FASconCAT-G can also read in and handle different file formats (FASTA, CLUSTAL, and PHYLIP) in a single run.

fasomerecords

Extracts FASTA records from multiFASTA file based on a list of FASTA headers

fasparser

A Windows Graphical Platform for Batch Manipulation of Tremendous Amount of Sequence Data

fasta_utilities

A collection of scripts developed to interact with fasta, fastq and sam/bam files.

fastani

Fast Whole-Genome Similarity (ANI) Estimation

fastenshtein

The fastest .Net Levenshtein around

fastobo

Faultless AST for Open Biomedical Ontologies.

fastortho

fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

fastq-screen

Detecting contamination in NGS data and multi-species analysis

fastqc

A quality control analysis tool for high throughput sequencing data

fastqc-1

sequana pipeline to perform parallel fastqc and summarize results with multiqc plot

fastremap

FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: https://arxiv.org/pdf/2201.06255.pdf

faststructure

A variational framework for inferring population structure from SNP genotype data.

fasttree

A convenient Makefile for compiling various versions of FastTree

fasttree-1

FastTree and FastList controls

fastx_toolkit

FASTA/FASTQ pre-processing programs

favites

FAVITES (FrAmework for VIral Transmission and Evolution Simulation)

fd

A simple, fast and user-friendly alternative to 'find'

fermi

A WGS de novo assembler based on the FMD-index for large genomes

fermikit

De novo assembly based variant calling pipeline for Illumina short reads

ffmpeg

Mirror of https://git.ffmpeg.org/ffmpeg.git

ffmpeg-builds

fgbio

Tools for working with genomic and high throughput sequencing data.

fido

A PowerShell script to download Windows retail ISOs