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plink-ng

A comprehensive update to the PLINK association analysis toolset. Beta testing of the first new version (1.90), focused on speed and memory efficiency improvements, is finishing up. Development is now focused on building out support for multiallelic, phased, and dosage data in PLINK 2.0.

plotcnv

An R package to create a pretty Copy Number Variant plot from a segments file

plotly

An interactive graphing library for R

plotsr

Tool to plot synteny and structural rearrangements between genomes

podman

Podman: A tool for managing OCI containers and pods.

polipo

The Polipo caching HTTP proxy

poly

A Go package for engineering organisms.

popart-current

popins2

Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs

poplddecay

PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files

poppr

🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction

popsicle

Multiple USB File Flasher

posh-git

A PowerShell environment for Git

powershell

PowerShell for every system!

powershellgallery

powertoys

Windows system utilities to maximize productivity

ppanggolin

Build a partitioned pangenome graph from microbial genomes

pplacer

Phylogenetic placement and downstream analysis

ppspcp-pan

A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline

prank-msa

Automatically exported from code.google.com/p/prank-msa

prequal

PREQUAL: a pre-alignment quality filter for comparative sequence analyses

prequel

Prequel for Laravel. Clear and concise database management.

primateai

deep residual neural network for classifying the pathogenicity of missense mutations.

process-exporter

Prometheus exporter that mines /proc to report on selected processes

prodigal

Prodigal Gene Prediction Software

prokevo

ProkEvo - an automated, reproducible, and scalable framework for high-throughput bacterial population genomics analyses.

prokka

:zap: :aquarius: Rapid prokaryotic genome annotation

pronto

A Python frontend to Ontologies.

protein-sequence-models

Pytorch modules and utilities for modeling biological sequence data

prothint

Protein hint generation pipeline for gene finding in eukaryotic genomes