Topic: calcium-imaging Goto Github
Some thing interesting about calcium-imaging
Some thing interesting about calcium-imaging
calcium-imaging,Set of ImageJ (FIJI) macros to import raw TIF images of time series Calcium imaging recordings, correct for photo-bleaching, identify regions of highest fluorescence change to assist in ROI placement, and calculate deltaF/F as a function of time for each ROI. Please cite Caccavano et. al. bioRxiv 2020.
User: acaccavano
calcium-imaging,Suite of MATLAB algorithms (recommended to be used with App Designer GUI) for the analysis and coincidence detection of local field sharp wave ripples (SWRs), local field oscillations (theta, gamma, etc.), spikes (SWR coincidence and spike-phase coupling), post-synaptic currents (PSCs), and calcium transients. Written in MATLAB 2022a Update 4
User: acaccavano
calcium-imaging,This repository contains code for morphology-free analysis of functional fluorescence microscopy. The focal algorithm, Graph-Filtered Time-trace (GraFT) Dictionary Learning, is published in Charles et al. 2022 in the IEEE Transactions of Image Processing.
User: adamshch
Home Page: https://pubmed.ncbi.nlm.nih.gov/35533160/
calcium-imaging,Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)
User: alexklibisz
calcium-imaging,a Python machine learning library for neurophysiology data
Organization: alleninstitute
Home Page: http://neuroglia.readthedocs.io
calcium-imaging,CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: https://git.io/ciatah_docs. Formerly known as calciumImagingAnalysis (ciapkg).
User: bahanonu
Home Page: https://git.io/ciatah_docs
calcium-imaging,A table containing imaging analysis tools for biology, with a focus on calcium imaging.
User: bahanonu
Home Page: https://bahanonu.com/syscarut/articles/226/
calcium-imaging,CGK-Laboratory calcium imaging analysis pipeline
Organization: cgk-laboratory
calcium-imaging,GUI for visualizing CaImAn processed imaging data.
User: chenhungling
calcium-imaging,Codes related to the paper "Attention-Based CNN-BiLSTM for Sleep States Classification of Spatiotemporal Wide-Field Calcium Imaging Data"
Organization: comp-imaging-sci
calcium-imaging,Codes related to paper "Automated sleep stage classification of wide-field calcium imaging data via multiplex visibility graphs and deep learning"
Organization: comp-imaging-sci
calcium-imaging,Decoding images from calcium recordings using data from stringer et al. 2018.
User: csinva
calcium-imaging,Experimental code for performing spike sorting using a neural network.
User: csinva
calcium-imaging,This is my toolbox for image processing and downstream analysis of calcium imaging data.
User: danustc
calcium-imaging,Real-time, interactive exploration of 3D image stacks
User: delunapaolo
calcium-imaging,Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
Organization: flatironinstitute
Home Page: https://caiman.readthedocs.io
calcium-imaging,Complete Matlab pipeline for large scale calcium imaging data analysis
Organization: flatironinstitute
calcium-imaging,Matlab routines for online non-rigid motion correction of calcium imaging data
Organization: flatironinstitute
calcium-imaging,Jupyter notebooks for analysis of dendritic two-photon calcium imaging data using the CaImAn toolbox.
Organization: helmchenlabsoftware
calcium-imaging,Calibrated inference of spiking from calcium ΔF/F data using deep networks
Organization: helmchenlabsoftware
calcium-imaging,Custom code (Python or Matlab) to compute centripetal propagation from astrocytic calcium recordings using pixel-wise correlation functions
Organization: helmchenlabsoftware
calcium-imaging,utility functions for analyzing (fly) calcium imaging data
User: hjmh
calcium-imaging,HNCcorr algorithm for neuron identification in calcium imaging datasets.
Organization: hochbaumgroup
calcium-imaging,Collection of LabView & Matlab tools for simultaneous calcium & fMRI measurements
Organization: ibt-fmi
calcium-imaging,Experimentlal pure-python API to read Inscopix data
Organization: inscopix
Home Page: https://inscopix.github.io/py_isx/
calcium-imaging,Calcium Imaging Analyzer (CaImAn) consists of a bunch of scripts written in python and put together to speed the analysis of calcium imaging experiments performed with the NIS-Elements Advanced Research software from Nikon.
User: isaac-jardin
calcium-imaging,Platform for Calcium Imaging analysis. DEPRECATED.
User: kushalkolar
calcium-imaging,An open-source automated surgical instrument for microendoscope implantation
User: liang-bo
Home Page: https://github.com/liang-bo/AutoStereota
calcium-imaging,Calcium Imaging Data ANalysis software
Organization: mishne-lab
calcium-imaging,Electrophysiology analysis in ventral midbrain-striatal-cortical organoids (MISCOs) pre- and post- optogenetic stimulation.
User: mzabolocki
calcium-imaging,Single-cell neural activity processing toolkit for calcium imaging recordings of deformable organisms
User: n0aht
calcium-imaging,High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
Organization: nel-lab
calcium-imaging,Mesmerize plugin for the napari viewer
Organization: nel-lab
calcium-imaging,Official code for "3DM: Deep decomposition and deconvolution microscopy for rapid neural activity imaging", Optics Express.
Organization: nicalab
calcium-imaging,Official code for BEAR. "Efficient neural network approximation of robust PCA for automated analysis of calcium imaging data", MICCAI 2021.
Organization: nicalab
calcium-imaging,Accurate denoising of voltage imaging data through statistically unbiased prediction, Nature Methods.
Organization: nicalab
Home Page: https://www.nature.com/articles/s41592-023-02005-8
calcium-imaging,NINscope HF is an updated design based on our regular NINscope miniscope that supports imaging up to 500 Hz. The firmware and software have been revised. The PLL is switched on to permit higher frame rates, while the hardware has been modified to allow cooling of the sensor PCB with pressurized air.
User: ninscope
calcium-imaging,calcium imaging pipeline tool
Organization: oist
calcium-imaging,Bonsai package for controlling headborne, calcium imaging miniscopes
Organization: open-ephys
calcium-imaging,Flow-Registration toolbox for 2P motion compensation
User: phflot
Home Page: https://www.snnu.uni-saarland.de/flow-registration/
calcium-imaging,Complete Matlab pipeline for matching in vivo recorded cells post hoc in histology
User: phil-an
calcium-imaging,Analysis and characterisation of cells within the gut wall using deep learning models. The current focus is on studying enteric neurons and enteric glia.
User: pr4deepr
Home Page: https://gut-analysis-toolbox.gitbook.io/docs/
calcium-imaging,Drawing ROIs with a non-graphical user interface
User: ptrrupprecht
calcium-imaging,SamuROI - Structured analysis of multiple user-defined ROIs, an open source Python-based analysis environment for imaging data.
Organization: samuroi
Home Page: http://samuroi.readthedocs.io/en/latest
calcium-imaging,a Python toolbox for reproducible analysis and visualization of NeuroPhysiological data.
User: smu160
Home Page: https://smu160.github.io/PvsNP/
calcium-imaging,Automated Cell Segmentation by Adaptive Thresholding (ACSAT)
User: sshen8
calcium-imaging,Code and tutorials for fitting generalized linear models (GLM) in Tensorflow 2
User: sytseng
calcium-imaging,Seeded Iterative Demixing (SID) of neuronal activity recordings made using Light Field Microscopy (LFM)
Organization: vazirilab
calcium-imaging,Signal Processing Toolbox for Calcium Imaging Data
User: vladscript
Home Page: https://vladscript.github.io/FinderSpiker/
calcium-imaging,interactive analysis of two-photon calcium imaging data
User: xiuyechen
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