Dan Xie (silly cat)'s Projects
Caffe: a fast open framework for deep learning.
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
The downstream analysis toolbox of processed calcium imaging data. Former 'analysis' and 'visualization' folders in the repository 'Image_toolbox'. A GUI module is included.
This is the control program for the microscope Everglades in Huang lab.
A collection of handy FIJI macros for image processing.
A filter wheel controller system based on Arduino and Parallax servos.
This is a toy program to operate the database of zebrafish lines that I am maintaining.
Silly cat's silly lab.
This is my toolbox for image processing and downstream analysis of calcium imaging data.
Deep Learning library for Python. Runs on TensorFlow, Theano, or CNTK.
Personal utility library
A toolbox for optical simulation. The implementation of phase-retrieval algorithm is included.
An implementation of the phase-retrieval algorithm for pupil function calculation.
Pure Numpy Implementation of the Coherent Point Drift Algorithm
A collection of Python-based control modules for USB-interfaced small devices.
Deep Learning Tutorial for Kaggle Ultrasound Nerve Segmentation competition, using Keras
Z-Brain Viewer and Analysis Scripts for MAP-Mapping