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atac-seq

atacworks

Deep learning based processing of Atac-seq data

awesome-nextflow

A curated list of nextflow based pipelines

awesome-react

A collection of awesome things regarding React ecosystem

byujobscriptgenerator

Slurm and PBS batch job script generator

c

Implementation of All ▲lgorithms in C Programming Language

ccn_caiman_mesmerize_workshop_2023

Repo for CCN workshop on caiman and mesmerize in January 2023

cell2cell

User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins

cellchat

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data

cellpose

a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

cfdnapipe

cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data

covid19-review

A collaborative review of the emerging COVID-19 literature. Join the chat here:

cv

A simple, modern CV / resume template.

data_sci_guide

A community-sourced data science repo.

devops-exercises

Linux, Jenkins, AWS, SRE, Prometheus, Docker, Python, Ansible, Git, Kubernetes, Terraform, OpenStack, SQL, NoSQL, Azure, GCP, DNS, Elastic, Network, Virtualization. DevOps Interview Questions

evobind

In silico directed evolution of peptide binders with AlphaFold

first-contributions

🚀✨ Help beginners to contribute to open source projects

free-data-science

🛠️ 🌐 Thematic list of high-quality data science resources

gseavis

An implement R package to visualize GSEA results

hummus

Molecular interactions inference from single-cell multi-omics data

introduction-to-bash

Resources for the O'Reilly Course 'Introduction to Bash'

introduction-to-bash-scripting

Free Introduction to Bash Scripting eBook

knowledgebase

recipes that save time

ktplots

Some tools for plotting single-cell data

liana

LIANA: a LIgand-receptor ANalysis frAmework

libra

loomr

An R-based interface for loom files

macs

MACS -- Model-based Analysis of ChIP-Seq

memos

An open source, lightweight note-taking service. Easily capture and share your great thoughts.

metabolomics-jupyter-notebooks