alleninstitute Goto Github PK
Name: Allen Institute
Type: Organization
Bio: Please visit http://alleninstitute.github.io/ for more information.
Location: Seattle, WA
Name: Allen Institute
Type: Organization
Bio: Please visit http://alleninstitute.github.io/ for more information.
Location: Seattle, WA
This repository contains a Jupyter Notebook that demonstrates the reverse mapping of the 3D atlas onto an imaged section.
Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas
R Shiny app for comparison of annotations (e.g., cell type assignments)
Data acquisition for patch clamp ephys / optogenetics / imaging experiments
Code and files for reproducing the analysis presented in "Neuropathological and transcriptomic characteristics of the aged brain," the platform paper for the Aging, Dementia, and TBI Study.
CodeOcean tool for making videos of SmartSPIM data sets
STP model implementation for NEST (neural simulation platform)
Optical projection tomography microscope for isotropic whole-brain imaging
Venus method files in the ā.pkgā format for the Semi Automated Passaging, Seeding and Maintenance, of the Allen cell collection of hiPSC lines expressing green fluorescent protein tagged to protein identifying specific cellular organelles and structures.
AICS FMS File Explorer Front End
AICS ML Segmentation (One-Way) Mirror
AICS Segmentation (One-Way) Mirror
Moved to aifi-swanson-teaseq
Code related to Swanson, et. al. for TEA-seq, ICICLE-seq, and scATAC-seq data processing, analysis, and visualization
Analysis tools specific to the aiephys multipatch project.
Code for reproducing the figures presented in: Single-neuron models linking electrophysiology, morphology and transcriptomics across cortical cell types
Creating the code base for All-active Model generation written on top of Bluepyopt
code for reading and processing Allen Institute for Brain Science data
Allen Institute mouse eye tracker.
Annotated data.
Utilities for slicing and dicing h5ad files without overwhelming your system's memory
ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
This python module simplifies the development of modules that would like to define and check a particular set of input parameters, but be able to flexibly define those inputs in different ways in different contexts.
Modeling code related to Arkhipov 2018 publication
Shared repo for EM connectomics and Array Tomography render based image processing modules
Shared model-based simulation and analysis tools (ranging from single-neuron to networks) as well as more general model/experiment analysis software (ephys, morphology, transcriptomics) of the Anastassiou team at the Allen Institute for Brain Science.
API's and Applications for ArrayTomography (AT)
A collection of notebooks and code snippets for accessing and using atlas related resources
Reproducible Plots for the Allen Institutes Brain Atlases
A declarative, efficient, and flexible JavaScript library for building user interfaces.
š Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
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An Open Source Machine Learning Framework for Everyone
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A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. ššš
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Some thing interesting about web. New door for the world.
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Some thing interesting about visualization, use data art
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We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ā¤ļø Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.