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ccn

R library for applying Common Cell type Nomenclature (CCN) standard

celerymetricsexporter

Export celery metrics with Prometheus client

cell-feature-data

cell_labeling_app

Web app for labeling cells in microscopy recordings

cell_locator_tools

Tools for manipulating Cell Locator json files

cell_type_mapper

Repository for storing prototype functionality implementations for the BKP

cellcount

Codes for generating pixel-wise ground truth from point annotations of cells, and a simple unet model to estimate cell counts in a 2 channel dataset.

cellorientation

the cell points that way

cellprofiler

An open-source application for biological image analysis

cellprofiler-plugins

Community-contributed and experimental CellProfiler modules.

cellservice-mongo-graphql-starter

A GraphQL API starter using NodeJS, TypeScript and Apollo Server

celltype_hierarchy

Python helper functions to work with the Tasic et al. 2018 hierarchical cell type tree

chandelierl23

Code and materials for Schneider-Mizell et al. 20xx

choi2019_connectomesynchrony

chromosome-network-modeling

cirrocumulus-archive

cirrocumulusprep

Data preparation pipeline for Cirrocumulus

claustrum_imaging_manuscript

cns_2018_tutorial

cns_2021

Resources for Allen Instutite tutorials presented at CNS 2021

cocoframer

COmmon COordinate FRAMEwork in R

conan-fmt

Conan package for fmt formatting library

consciousness-circlestim

Stimulus for a consciousness experiment

contrast_analysis

copier-pdm-npc

Copier template for Mindscope Neuropixels projects

cortical-layers

Automatically detecting cortical layers of MICrONS segmentation data

cortical_coordinates

Code and scripts for used in the generation of cortical streamlines and coordinates for the Allen CCF

coupledae

Repository for NeurIPS 2019 paper

coupledae-patchseq

Multimodal data alignment and cell type analysis with coupled autoencoders.

cplae_met

Coupled autoencoder extension for MET analysis.