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valr

Genome Interval Arithmetic in R

variant-filter

A false-positive filter for variants called from massively parallel sequencing

variant-filtration-tool

Support tools for the GDC Variant Filtration Workflow

variant_calling_pipeline

A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL.

variantkey

Numerical Encoding for Human Genetic Variants

variantqc

Variant quality checking scripts.

variantstore

VariantStore: A Large-Scale Genomic Variant Search Index

variantvisualization.jl

Julia package for visualization of genomic variation data.

varmyknife

Collection of assorted tools for processing, filtering, annotating, organizing, merging, comparing, and reformatting variant data.

vast-tools

A toolset for profiling alternative splicing events in RNA-Seq data.

vawk

An awk-like VCF parser

vcf-kit

VCF-kit: Assorted utilities for the variant call format

vcf-simplify

A python parser to simplify and build the VCF (Variant Call Format).

vcf-validator

Validation suite for Variant Call Format (VCF) files, implemented using C++11

vcf2gsgp

The Python implementation of the GSGP algorithm.

vcf2maf

Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

vcfanno

annotate a VCF with other VCFs/BEDs/tabixed files

vcflib

a simple C++ library for parsing and manipulating VCF files, + many command-line utilities

vcfr

Tools to work with variant call format files

verifybamid

verkko

verticalize

Simple tool to verticalize text delimited files.

vg

tools for working with genome variation graphs

viewfusion

View fusion event by circos plot

viper

VIPER (Variant InsPector and Expert Rating tool) can be utilised to view variant calls and decide whether or not those are true or false positives.

viridis

Implementation of the Matplolib 'viridis' color map in R

viz-pub

A place to publish data-vizes

voir

Tools for graphically viewing data

vsearch

Versatile open-source tool for metagenomics

waffle

Make waffle (square pie) charts in R