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gwas-pipelines

This is a GWAS pipeline that is intended to be run with biobank size data

gwas_genes

Find nearby genes that may be affected by a tagging SNP.

gwaspipeline

gwasrapidd

gwasrapidd: an R package to query, download and wrangle GWAS Catalog data

gwdegree

h3agwas

GWAS Pipeline for H3Africa

hail

Scalable genomic data analysis.

halvade

New url: https://github.com/biointec/halvade

hapdip

The CHM1-NA12878 benchmark for single-sample SNP/INDEL calling from WGS Illumina data

haplor

haploR: utilities for mining Haploreg and other similar web-based tools

hatchet

a new algorithm, Holistic Allele-specific Tumor Copy-number Heterogeneity (HATCHet), that infers allele and clone-specific CNAs and WGDs jointly across multiple tumor samples from the same patient, and that leverages the relationships between clones in these samples.

hcasmc_eqtl

hcop

HGNC Comparison of Orthology Predictions (HCOP)

hdp

R pkg for Hierarchical Dirichlet Process

heatmap

Shiny App Example for using rCharts and Highcharts Heat Maps

heatmap-app

A Shiny App for Interactive Gene Expression HeatMap Visualisation

heatmap3

heatmap3 is an improved heatmap package. It is completely compatible with the original R function heatmap, and provides some more powerful and convenient features.

heatmaply

Interactive Heat Maps for R Using plotly

heatstarseq_gh

A R/shiny web application to browse and compare public RNA-seq / ChIP-seq / CAGE datasets

helmsman

highly-efficient & lightweight mutation signature matrix aggregation

hera

here

A simpler way to find your files

heterogeneity

Repository containing code used for the analysis described in the PCAWG-11 intra-tumour heterogeneity paper

hgnchelper

Identify and correct invalid gene symbols

hgvslib

hgvslib provides functions to parse and compare the equivalency of variant strings described according to Human Genome Variation Society (HGVS) syntax.

hhighlighter

A command line tool to highlight terms

hic_tools

A collection of tools for Hi-C data analysis

higlass

Fast contact matrix visualization for the web.

hilda

R package to investigate differences in mutational signatures

hisat2

Graph-based alignment (Hierarchical Graph FM index)