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rna_mutect_1.0-1

rnaseq

RNASeq pipeline

rnaseq-data-analysis

rnaseqc

Updated version of the RNA-SeQC software

rnaseqcomp

Benchmark for RNA-seq quantification pipelines

rnaseqdb

rnaseqdepipeline

RNA-Seq differential gene expression pipeline

rnaseqr

An R package of RNA-seq workflow

rnaseqview

RNA-seq Viewer Team at the NCBI-assisted Boston Genomics Hackathon

roxygen

rray

Simple Arrays

rsem_tutorial

A short tutorial on how to use RSEM

rsempipeline

A pipeline for running rsem analysis on thousands of samples

rstarthere

A guide to some of the most useful R Packages that we know about

rstudio-conf

Materials for rstudio::conf

rstudio-conf-2018

Slide, code and data for "Applied Machine Learning" at Rstudio-conf 2018

rtcga

RTCGA package offers download and integration of the variety and volume of TCGA data.

rtcga.data

Datasets from The Cancer Genome Atlas Project

rtfbs_db

Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.

rtg-tools

RTG Tools: Utilities for accurate VCF comparison and manipulation

runs

Scripts for reproducing analyses of large RNA-seq datasets

rush

A cross-platform command-line tool for executing jobs in parallel

ruvseq

Development repository for RUVSeq

rvdriver

A statistical approach to detect cancer driver genes utilising the RNA Variant Allele Frequency of somatic mutations

rvtests

Rare variant test software for next generation sequencing data

sailfish

Rapid Mapping-based Isoform Quantification from RNA-Seq Reads

salmon

Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments

salmonte

SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances

sambamba

Tools for working with SAM/BAM data

samblaster

samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.