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Mutational signature analysis for low statistics SNV data
Σ sigma.js for R
🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R
R package containing useful functions for mutational signature analysis
SignatureAnalyzer-GPU provides a Tensorflow implementation of automatic relevance determination non-negative matrix factorization (ARD NMF).
Mutation Signatures in Individual Tumours Deciphered by MCMC
Revised version of SigProfilerClusters
SigProfilerExtractor
SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED file). The tool seamlessly integrates with other SigProfiler tools.
SigProfilerPlotting provides a standard tool for displaying all types of mutational signatures as well as all types of mutational patterns in cancer genomes. The tool seamlessly integrates with other SigProfiler tools.
An R wrapper for running the SigProfilerPlotting framework
Automatically exported from code.google.com/p/simple-r
An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina data as possible. Some of these quirks include the potential for chimeric reads, and non-biotinylated fragment pull down in mate-pair libraries . Additionally the program provides the ability to model both site and base specific error, and scripts are provided to train this error model on real datasets. My hope in creating this program is to generate as realistic data as possible to assist in assessing the accuracy of genome assembly tools.
Single cell bioinformatics class at the Sanford Consortium for Regenerative Medicine (SCRM) in 2016
tool for finding enhancer rnas in single cell rna seq data
Materials for 3 hour hands-on workshop entitled "Creating and running software containers with Singularity"
Convert RNA-STAR aligner "SJ.out.tab" files to "Percent spliced-in" (Psi) scores
Reference data utilities for mskilab
A frictionless, pipeable approach to dealing with summary statistics
Inspect kallisto RNA-Seq output
Galaxy tool integration examples for the SMC Het Challenge
Modular blocks to build Snakemake workflows for reproducible NGS analyses
Snakemake wrappers, specifically designed for the NIH Biowulf system using TACC Modules
Structural variation and indel detection using rolling local string graph assembly
R package: parallel computing toolset for relatedness and principal component analysis of SNP data (Development Version)
SOAPdenovo-Trans, a de novo transcriptome assembler designed specifically for RNA-Seq. We evaluated its performance on transcriptome datasets from rice and mouse.
Mitochondrial Solar Plot
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.