Comments (1)
Hi,
I'm glad you found this tool useful. For oncoplots, no need for any length correction. You can plot them as it is. It doesn't matter which sequence source (can be WXS, WGS, Amplicon, etc) was used to detect variant.
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Related Issues (20)
- Feature request: Extend subsetMaf to drop samples by barcode HOT 2
- How to determine the value of captureSize? HOT 1
- plotClusters() "genes=" argument doesn't accept a vector of gene names HOT 2
- ICGC dataset error in plotmafSummary HOT 1
- somaticInteractions not plotting certain pairwise interactions HOT 7
- Oncoplot - Cell hight and width HOT 2
- Question about gisticChromPlot HOT 6
- Adding rows containing variants into maf file. HOT 3
- Plot both arm-level(broad) versus focal amplifications (and deletions) HOT 6
- pfamDomains throws uninformative error when failing to parse less common AAchanges HOT 3
- clinicalEnrichment seems to ignore samples with no mutations HOT 3
- resizing oncoplots HOT 3
- oncoplot Error.. out_of_bound HOT 5
- Too many multi_hit and missense mutation HOT 2
- Issue with importing GISTIC data into maftools HOT 3
- The issue of nonframeshift (block) substitution in annovarToMaf HOT 3
- Combine MAF, GISTIC, and clinical data using maftools HOT 2
- BUG: subsetMAF function returns wrong data
- BUG: subsetMAF functions returns wrong data HOT 7
- an splice_region variant does not appear in the oncoplot HOT 12
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