Question about gisticChromPlot about maftools

[PoisonAlien]

Hi,
Thanks for the issue. Unfortunately, the current implementation does not support non-human genomes. However, I don't see any problems with support for other organisms. It just needs the contig names and sizes.
Would it be possible to share the GISTIC object to test?

[AnnaDvdH]

Hello,

Thank you very much for the quick response. I am still a bit new to the world of bioinformatics so apologies for the silly question, but by "contig names and sizes" what do you mean? Also, here is a dummy GISTIC object file with canine CNA data. Hope this will help with running some tests.

Thank you again for all the help and best regards!

[PoisonAlien]

Hi,

Thank you for sharing the data. Unfortunately, I spoke too early. It is a bit more complicated than I thought to support non-human genomes. I am swamped with work at the moment and it might take a while to look into this properly.

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This issue is stale because it has been open for 60 days with no activity.

[github-actions]

This issue is stale because it has been open for 60 days with no activity.

[github-actions]

This issue was closed because it has been inactive for 14 days since being marked as stale.