Comments (3)
Hi,
I wouldn't suggest binding the rows. Rather pass your table of CNVs to the argument cnTable
in read.maf
.
Reorganize your data into below format and use it with read.maf
cnv
Hugo_Symbol Tumor_Sample_Barcode CN
1: X1q21.1.. DUKE_31085175 Amp
2: X1q23.2.. DUKE_31085175 Amp
3: X1q24.3.. DUKE_31085175 Del
4: X2q37.1.. DUKE_31085175 Amp
5: X2q37.3.. DUKE_31085175 Amp
6: X5q13.2.. DUKE_31085175 Del
maftools::read.maf(maf = MAF, cnTable = cnv)
I hope this helps.
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