Comments (2)
Hi,
Thanks for the issue. I am having a hard time reproducing your issue. On an example dataset from TCGA it works properly
b = maftools::tcgaLoad(study = "BRCA")
heterogeneity.10 <- inferHeterogeneity(b, tsb = "TCGA-AN-A046-01A-21W-A050-09")
plotClustGenes <- c("AGL", "MYO9B", "EXTL2")
heterogeneity.10 %>% plotClusters(genes= plotClustGenes)
Could you please update the package to a newer version from GitHub and try again?
from maftools.
Got the same error when I tried with the TCGA dataset, but updating it worked for both the TCGA example and my data.
Sorry, I thought I had updated before trying but got permission denied and didn't notice, I should have known better.
Thanks a lot!
from maftools.
Related Issues (20)
- The get_col_df function seems to have a bug in the 6th line HOT 3
- Error in if (dist <= mergeDist) { : missing value where TRUE/FALSE needed HOT 3
- sampleSwaps.R: add an error message in case of missing index files HOT 6
- Lollipopplot does not show complete protein length. HOT 6
- Questions about MATH score HOT 3
- Error in get_lp_data(maf = m1, geneID = gene, AACol = AACol1, refSeqID = refSeqID, : Structure for protein BAGE3 not found. HOT 3
- unknown tumor_sample_barcode HOT 1
- extractSignatures HOT 2
- filterMaf error HOT 2
- gisticChromPlot for individual samples HOT 2
- Why is MNP excluded when reading.maf? HOT 1
- Discrepancy in MATH Scores HOT 1
- selectedPathways argument in oncoplot not functioning properly with user-defined pathways HOT 1
- plotmafsummary mutated gene HOT 1
- Border of gisticOncoPlot
- sampleSwaps Error: Zero SNPs to analyze
- Why are my lines in the GISTICChromPlot not straight?
- Error :could not find function "OncogenicPathways" HOT 3
- Issue with maftools::gtMarkers memory not mapped
- The subsetMaf function is ineffective for screening samples and genes. HOT 2
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from maftools.