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sequenceprocessing

Small tool that provides filtering, trimming, sorting, and statistics of DNA Sequence files

sequencetools

Set of scripts etc. to work with DNA sequence and related files

seurat

R toolkit for single cell genomics

sevenbridges-python

SevenBridges Python Api bindings

sevenbridges-r

CWL schema, Meta schema, API client and SDK helper in R

sframe

SFrame: Scalable tabular and graph data-structures built for out-of-core data analysis and machine learning.

sgseqbioc2016

SGSeq workshop BioC 2016

shell-toolbox

A small selection of tools that may be useful to people doing shell-script development in a Unix environment.

shiny

Easy interactive web applications with R

shiny-baseline-correction-cancer-cn

R Shiny app for Baseline Correction for Copy Number Data from Cancer Samples

shogun

The Shogun Machine Learning Toolbox (Source Code)

shogun-data

The Shogun Machine Learning Toolbox (Data Sets)

shotmap

A Shotgun Metagenome Annotation Pipeline

siftr

Predicting the impact of mutations on protein function

simple_tensorflow

Some Simple Stuff in TensorFlow

sincell

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/sincell.html Contributions: http://bioconductor.org/. Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=sincell.

single-cell-sequencing

singlecellseq

sirnadb

archived code for siRNA database search and alignment

sismid

Pathogen evolution, selection and immunity

sisyphus

Pipeline scripts for processing and QC of Illumina HiSeq and MiSeq data

skat

:exclamation: This is a read-only mirror of the CRAN R package repository. SKAT — SNP-Set (Sequence) Kernel Association Test

skat_tests

Run Collapsed Association Tests w/ Rare Variants using SKAT Tests

sklearn_pycon2015

Materials for my Pycon 2015 scikit-learn tutorial.

sklearn_tutorial

Materials for my scikit-learn tutorial

sleuth

Inspect kallisto RNA-Seq output

slides

slidify

Generate reproducible html5 slides from R markdown

slipper

Tidy and easy bootstrapping

smith-watermanalgorithm

algorithm for finding local sequence alignments