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Small tool that provides filtering, trimming, sorting, and statistics of DNA Sequence files
This project forked from brandstaetter/sequenceprocessing
Small tool that provides filtering, trimming, sorting, and statistics of DNA Sequence files
A tool to process DNA Sequence files produced by Sequencers like the Roche/454 Titanium FLX. The settings are configurable via a XML file. Possible operations: - load FASTA+QUAL files - load files containing MID and Primer sequences for sorting - allow "fuzzy" matching of MIDs and Primers with user-defined number of allowed mismatches - filter - min. Sequence length - max. Number of Ns - average Quality - after-sort: - single MID - single Primer - trimming: - quality - trim off MID and Primer - fixed points - at motif - output - all in a single file, or files per MID, Primer, or MID-Primer combination - compression as zip, tar.gz and tar.bz - other things that might come up…
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