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1000genomes_data_indexes

The index files for sequence and other data created for the 1000 Genomes project and the International Genome Sample Resource

16s-pipeline

Pipeline to process illumina 16S sequence data

2016-02-25-adv-programming-embl

More robust R programming, testing and debugging

2020plus

Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests

4cpipeline

ads1-notebooks

Copies of notebooks used in the practical sessions for Algorithms for DNA Sequencing

ads1-slides

Slides for Algorithms for DNA Sequencing Coursera class

adv-r

Advanced R programming: a book

alenzhao.github.io

alfacinha

Simulating the evolution of biological sequences with neighbor-dependent substitutions

all_db

alview

Alview : Alignment View for BAM files - a fast,portable tool for viewing short reads as native GUI program, command line or via webserver

ancestry

Tracing coalescent histories

annotationhub

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/AnnotationHub.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=AnnotationHub.

annotationhub_docker

Docker container for AnnotationHub Server

api-client-javascript

A simple web application that demonstrates how javascript can be used to fetch data from the Google Genomics APIs.

api-client-python

Provides a simple genome browser that pulls data from the API in Python.

appliedml_python_coursera

Material and note of the course of Applied ML in Python

approximate_bayes

A worked example of approximate Bayesian computation in R

apt-cacher-ng-config

Startup script for docker containers apt-cacher-ng and rawdns

ascatngs

Somatic copy number analysis using paired end wholegenome sequencing

ashr

An R package for adaptive shrinkage

asmutils

asmutils is a set of miscellaneous unix utilities written in assembly language

asymmetry

:exclamation: This is a read-only mirror of the CRAN R package repository. asymmetry — Visualizing Asymmetric Data

atac_dnase_pipelines

ATAC-seq and DNase-seq processing pipeline

atom-r-exec

Send R code to various R consoles from the Atom editor

awesome-deep-learning

A curated list of awesome Deep Learning tutorials, projects and communities.

awesome-nosql

:computer: Curated list of awesome resources and links about using NoSQL databases

awesome-random-forest

Random Forest - a curated list of resources regarding random forest

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.