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gem

A package to efficiently navigate epigenome wide association studies (EWAS) and integrate genotype and interaction between genotype and environment (GxE).

gemma

Genome-wide Efficient Mixed Model Association

gene-fusion-analysis

:stars: Parsing and basic network analysis of fusion genes from the Catalogue of Somatic Mutations in Cancer (COSMIC) database

gene_mutations

genedb

Web front-end for genomic data, developed at the Pathogen Genomics group, Wellcome Trust Sanger Institute

geneexp_h2

Survey of the Heritability and Sparsity of Gene Expression Traits Across Human Tissues

generanking

Gene Ranking of RNA-seq data via Discriminant Non-negative Matrix Factorization

genericsvd.jl

Singular Value Decomposition for generic number types

geneseq

Web interface to search all possible fusion partners of a gene in a FusionSeq database (or all instances of a particular fusion gene).

genesets

A set of scripts to build gene set databases for use with the SetRank gene set enrichment analysis package.

genesets-1

Gene Sets as R Environments

genome

Core modules used by the GMS

genome-explorer

:microscope: Social network for Bacteria

genomerunner_web

Web version of GenomeRunner

genomicdatacommons

Provide R access to the NCI Genomic Data Commons portal.

genomicspapers

The Leek group guide to genomics papers

genomon-docs

Document of Genomon pipeline

genomon_rscripts

genomonexpression

python script for calculating expression values from RNA-seq

genomonfisher

Genomon fisher exact test mutation caller

genomonmutationannotator

genomonmutationfilter

genomonpipeline

Genomon pipeline in 2015

genomonpresentation

Repository for presentation slides and so on

genomonqc

Genomon Quality Control

genomonsplicingmutation

detection of mutations causing splicing change

genomonsv

structure detection program

genomonviruschecker

software for checking the virus sequences in fastq files

gephi

Gephi - The Open Graph Viz Platform

gephi-toolkit

Gephi Toolkit - https://gephi.org/toolkit