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Alen Zhao's Projects

clump icon clump

CLUstering by Mutation Position

clusterexperiment icon clusterexperiment

R package of techniques for comparing clusterings of single-cell sequencing data

clustools icon clustools

Tools for clustering single cell sequencing data

cmake icon cmake

CMake, the cross-platform, open-source build system.

codelabs icon codelabs

Codelabs demonstrating usage of several tools and systems on genomic data.

codex icon codex

A normalization and copy number variation calling procedure for whole exome DNA sequencing data.

cogena icon cogena

co-expressed gene-set enrichment analysis

coloncancerwgbs icon coloncancerwgbs

Six paired tumor-normal WGBS samples from Ziller et al. (2013) PMID: 23925113. Only chr22.

compare_coverage_depth icon compare_coverage_depth

A Julia script for comparing the coverage between two chromosomes for a set of sequenced DNA samples.

compass icon compass

Combinatorial Polyfunctionality Analysis of Single Cells

contestprogramming icon contestprogramming

Collection of complete and partial java solutions for programming contests (Codeforces, ACM ICPC)

copy-number-analysis icon copy-number-analysis

Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis

copycat icon copycat

a parallel R package for detecting copy-number alterations from short sequencing reads

coursera icon coursera

Data sets and scripts for Coursera Big Data Specialization.

coursera-1 icon coursera-1

Coursera Machine Learning class exercises (converted from Octave to Python + Numpy)

courses icon courses

Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1

crimson icon crimson

Bioinformatics tool outputs converter to JSON or YAML

crispresso icon crispresso

Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data

crunch icon crunch

Crunch is an Apache TLP now, and lives at http://crunch.apache.org/

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