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graynet

Subject-wise networks from structural MRI (thickness, gray matter density, curvature, gyrification)

gym

A toolkit for developing and comparing reinforcement learning algorithms.

hansen_crossdisorder_vulnerability

Data and code supporting Hansen et al., 2021, "Molecular and connectomic vulnerability shape cross-disorder cortical atrophy"

hansen_genescognition

Code supporting Hansen et al., 2021 "Mapping gene transcription and neurocognition across human neocortex".

happe

Harvard Automated Pre-Processing Pipeline for EEG

happe-1

EEG Pre-Processing Pipeline,Lopez, K. L. et al. HAPPILEE: HAPPE In Low Electrode Electroencephalography, a standardized pre-processing software for lower density recordings. NeuroImage 260, 119390, doi:https://doi.org/10.1016/j.neuroimage.2022.119390 (2022).

hbayesdm

Hierarchical Bayesian modeling of RLDM tasks, using R & Python

hbm_dyslexia_classification

Matlab code for nested linear svm & logistic classifcation in HBM paper (Inner cross validation for P threshold selection, outer cross validation for classifier evaluation).

hcppipelines

hermes

Open-source software package (HERMES) for the analysis of functional and effective brain connectivity from neurological data (e.g. MEG, EEG, iEEG).

heterogeneity

Hierarchical brain network model (Demirtas et al., 2019)

hhsa_cpu_openmp

Holo-Hilbert Spectral Analysis (HHSA) OpenMP version: Huang, Norden E., et al. "On Holo-Hilbert spectral analysis: a full informational spectral representation for nonlinear and non-stationary data." Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences 374.2065 (2016): 20150206.

hmm-mar

Toolbox for segmentation and characterisation of transient connectivity

homer3

hosts

镜像：https://coding.net/u/scaffrey/p/hosts/git

hrvas

Heart Rate Variability Analysis Software

hydra

Heterogeneity through discriminative analysis

imagen_databank

Imagen databank operations

imagen_processing

Imagen data processing

infomap

Multi-level network clustering based on the Map equation

interpretableneurodl

intro_to_modelling

This repository contains the files for the "Introduction to Modelling Brain Dynamics" workshop run at CUBRIC: https://www.youtube.com/watch?v=ZxXE2eQ7Y38&ab_channel=LukeTait

jmbayes

Joint Models for Longitudinal and Survival Data using MCMC

joint

Joint spectral decomposition for the parcellation of the cerebral cortex

jumeg

MEG Data Analysis at FZJ

ksmodel_fmridynamics

Modular origins of high-amplitude cofluctuations in fine-scale functional connectivity dynamics, PNAS, November 8, 2021 | 118 (46) e2109380118

labstreaminglayer

LabStreamingLayer super repository comprising submodules for LSL and associated apps.

lasagne

Lightweight library to build and train neural networks in Theano

latentstructure

code and data from Latent Structure modeling paper

laynii

Stand alone fMRI software suite for layer-fMRI analyses.