zeigar / imagen_databank

Imagen databank operations

Databank operations of the Imagen project

Databank operations are mostly documented internally at NeuroSpin.

Basic information is available from the project wiki.

This Python package combines a Python library imagen_databank for basic sanity check and preprocessing of Imagen data and a set of scripts to extract, check, anonymize and transform raw Imagen data.

imagen_databank

Read and perform sanity checks on raw datasets.

cantab

Extract age from FU2 Cantab data.

dawba

Remove identifying data and convert PSC1 to PSC2 in Dawba data, after manual download from the youthinmind server.

onsets

Extract FU3 onsets from datasets, as onset files now follow a distinct path from DICOM files.

psytools

Download Psytools data as CSV and JSON files from the Delosis server. Remove identifying data and convert PSC1 to PSC2.

sex

Derive reference sex of Imagen subjects from multiple sources. There had been errors at baseline.