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seizure-type-classification-tuh

seizure type classification using TUH dataset

separating_periodic_from_aperiodic_psds

Gerster et al. 2022. "Separating neural oscillations from aperiodic 1/f activity: challenges and recommendations."

seqnmf

An algorithm for unsupervised discovery of sequential structure

shrinkit

MATLAB toolbox to perform empirical Bayes shrinkage on rs-fMRI connectivity matrices for subject-level parcellation

simlr

Implementations both in R and Matlab of SIMLR (https://www.nature.com/articles/nmeth.4207) and CIMLR (https://www.biorxiv.org/content/early/2018/02/16/267245) Multi-kernel LeaRning methods.

slantbrainseg

Deep Whole Brain Segmentation Using SLANT Method

slicer

Multi-platform, free open source software for visualization and image computing.

smriprep

Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)

spatio-temporal-brain

A Deep Graph Neural Network Architecture for Modelling Spatio-temporal Dynamics in rs-fMRI Data

spectral_connectivity

Frequency domain functional and directed connectivity analysis tools for electrophysiological data

spin-test

This toolbox includes MATLAB scripts to perform a "spin test" of anatomical correspondence between cortical surface maps, as presented in "On testing for spatial correspondence between maps of human brain structure and function," Alexander-Bloch et al., NeuroImage, 2018.

sprint

Simulating neural time series, spectrogram parameterization (using SPRiNT), Wilson, L. E., da Silva Castanheira, J., & Baillet, S. (2022). Time-resolved parameterization of aperiodic and periodic brain activity. Elife, 11, e77348.

sr_enn

Constructing neural network models from brain data reveals representational transformations linked to adaptive behavior. Nat Commun 2022, 673.

stan

Stan development repository (home page is linked below). The master branch contains the current release. The develop branch contains the latest stable development. See the Developer Process Wiki for details.

suarez_neuromorphicnetworks

Code supporting Suarez et al., Learning function from structure in neuromorphic networks. Nat Mach Intell 3, 771–786 (2021).

subcortex

supervertices

Supervertex clustering for the parcellation of the cerebral cortex

sustainmatlab

swarm_learning

Scripts for figures and calculations of the manuscript by Warnat-Herresthal el al. 2020

synthseg

Contrast-agnostic segmentation of MRI scans

taac

TMS Adaptable Auditory Control

tapas

TAPAS - Translational Algorithms for Psychiatry-Advancing Science

tedana

TE-dependent analysis of multi-echo fMRI

tensorpac

Phase-Amplitude Coupling under Python

tmkl

Resting State Dynamics Meets Anatomical Structure: Temporal Multiple Kernel Learning (tMKL) Model

tms_targeting

Scripts and matlab files to identify an optimal TMS target using fMRI data and e-field modelling.A generalized workflow for conducting electric field–optimized, fMRI-guided, transcranial magnetic stimulation. Nature protocols, 15(11), 3595-3614. 2020

toad

No Longer Maintained

toolbox

Analysis tools for quantitative MRI and in-vivo histology using MRI (hMRI)

tracula

trentool3

Open-Source MATLAB toolbox for transfer entropy estimation