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pnlnipype

PNL pipeline for NIFTI images

pnlpipe

A modular, extensible pipeline framework that uses a simple file based build system library. Includes modules for the PNL neuroimaging pipelines.

prgnn_fmri

Pytorch implementation of pooling-regularized GNN (PRGNN) for fMRI analysis. https://arxiv.org/pdf/2007.14589.pdf

prmlt

Matlab code for machine learning algorithms in book PRML

pstrip

PCA Model for Brain Extraction

psycho.r

Efficient and Publishing-Oriented Workflow for Psychological Science

psychopy

For running psychology and neuroscience experiments

psychrnn

pybasc

Bootstrapped Analysis of Stable Clusters- A semi-automated fMRI individual and group level functional parcellation technique

pyddm

A drift-diffusion modeling (DDM) framework for Python3

pydeface

A tool to remove facial structure from MRI images.

pygcn

Graph Convolutional Networks in PyTorch

pygpc

A Sensitivity and uncertainty analysis toolbox for Python based on the generalized polynomial chaos method

pygps

pyGPs is a library containing an object-oriented python implementation for Gaussian Process (GP) regression and classification.

pymc3

Probabilistic Programming in Python: Bayesian Modeling and Probabilistic Machine Learning with Theano

pymvpa

MultiVariate Pattern Analysis in Python

pynetstim

Python package for brain network stimulation

python-workshop-suzhou

A place where all demo code and data are stored.

quantosuserguide

quantOS user guide

quicknat_pytorch

PyTorch Implementation of QuickNAT

quicknatv2

Fast Whole Brain Segmentation (Layers, codes and Pre-trained Models)

quinn2018_taskhmm

rasrmatlab

A Matlab Toolbox for correcting EEG artifacts using Riemannian Artifact Subspace Reconstruction.

rcharts

Interactive JS Charts from R

resnet_cnn_mri_adni

Code for Residual and Plain Convolutional Neural Networks for 3D Brain MRI Classification paper

rest

Real-time EEG Source-Mapping Toolbox (REST): Online ICA and Source Localization

roiconnect

ROI connectivity analysis in EEG

rsatoolbox

A Matlab toolbox for representational similarity analysis

rstan

RStan, the R interface to Stan

scirun

SCIRun is a Problem Solving Environment, for modeling, simulation and visualization of scientific problems. This is version 5, the upgraded version of SCIRun v4.