Shicheng Guo's Projects
Batch-adversarial variational auto-encoder (BAVARIA) for simultaneous dimensionality reduction and integration of single-cell ATAC-seq datasets
BBMeth: An R package for fitting methylation data with a beta-binomial model
R package that helps create and export ggplot2 charts in the style used by the BBC News data team
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/BEAT.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=BEAT.
:microscope: BEDOPS: high-performance genomic feature operations
an R package for retrieval of curated expression datasets and for gene list expression localization enrichment tests, Komljenovic et al. f1000Research
R package to perform Bayesian Genome-Wide Association Studies
Modeling bispecific cytokine fusions.
Deep Neural Networks Predict MHC-I Epitope Presentation and Transfer Learn Neoepitope Immunogenicity
:exclamation: This is a read-only mirror of the CRAN R package repository. bigsnpr — Analysis of Massive SNP Arrays. Homepage: https://privefl.github.io/bigsnpr Report bugs for this package: https://github.com/privefl/bigsnpr/issues
BioBERT: a pre-trained biomedical language representation model for biomedical text mining
A bioinformatics tool to search and map identifiers and special keywords
Tutorial on building a computing cluster for bioinformatics
Testing the distribution of Bioconductor packages through Conda / Bioconda infrastructure
Assorted scripts in Perl, Bash, R and whatsoever directly from a bioinformaticians scripts/ folder
Unsorted scripts for bioinformatics. Former google.code bioinformatics-misc
Javascript based component for highlighting text-mined annotations of different semantic types in a full text article identified by a PMCID
Genetics of blood and urine biomarkers in the UK Biobank
:books: Biomedical knowledge mining using GOSemSim and clusterProfiler
Core BioPerl 1.x code
BioPharma @ Computational Biology
BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences
Biostar Q&A
A program that scrapes news and price data for biotech stocks seeking FDA approval, built using Python and AutoHotkey