shicheng-guo Goto Github PK

hops

Allows to compute the HOrizontal Pleiotropy Score (HOPS) from summary statistics.

housekeeping

howtobook

Readme

hpc-submission-scripts

Example job submission scripts for HPC systems (PBS and SLURM)

hsa00010

hsa01100

htcondor

human-phenotype-ontology

Ontology for the description human phenotypes

humandiseaseontology

Repository for the Human Disease Ontology.

humankidney_eqtl_and_snatac-seq

codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data

hyprcoloc

R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data

iatmecell

A software R package for identification of abnormal tumor microenvironment cells

ideep

iDeep: integrated prediction of RNA-protein binding sites using deep learning

igwas

iGWAS: image-based genome-wide association of self-supervised deep phenotyping of human medical images

ihec-metadata

This is the repo for the IHEC metadata standards

imix

Integrative genomics using a multivariate mixture model framework

immunarch

🧬 Immunarch by ImmunoMind: R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires

immunedeconv

A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter)

immuno-navigator

Immuno-Navigator Data Analysis

infiniumpurify

Tumor Purity Estimation by hm450k (Author: Naiqing Zhang at Bioinformatics 2016)

inflmmation

inflammation project

inspire-ctdna

Custom R scripts for data visualization and statistical analysis for Bratman, Yang et al. 2020 Personalized circulating tumor DNA analysis as a predictive biomarker in solid tumor patients treated with pembrolizumab

integration_analysis_scripts

Scripts for multi-omics integration

interproscan

intervar

A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline

intro_dgm

An Introduction to Deep Generative Modeling: Examples

iobr

IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.

iquasar-internship

irap

integrated RNA-seq Analysis Pipeline

irisas

Integrated region-based variants synchronization and Annotation for different inbreeding lines