Shicheng Guo's Projects
Allows to compute the HOrizontal Pleiotropy Score (HOPS) from summary statistics.
Readme
Example job submission scripts for HPC systems (PBS and SLURM)
Ontology for the description human phenotypes
Repository for the Human Disease Ontology.
codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data
R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data
A software R package for identification of abnormal tumor microenvironment cells
iDeep: integrated prediction of RNA-protein binding sites using deep learning
iGWAS: image-based genome-wide association of self-supervised deep phenotyping of human medical images
This is the repo for the IHEC metadata standards
Integrative genomics using a multivariate mixture model framework
🧬 Immunarch by ImmunoMind: R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires
A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter)
Immuno-Navigator Data Analysis
Tumor Purity Estimation by hm450k (Author: Naiqing Zhang at Bioinformatics 2016)
inflammation project
Custom R scripts for data visualization and statistical analysis for Bratman, Yang et al. 2020 Personalized circulating tumor DNA analysis as a predictive biomarker in solid tumor patients treated with pembrolizumab
Scripts for multi-omics integration
A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline
An Introduction to Deep Generative Modeling: Examples
IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.
integrated RNA-seq Analysis Pipeline
Integrated region-based variants synchronization and Annotation for different inbreeding lines