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samsa2

SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customizable reference databases.

samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data

sanbomics_scripts

scripts and notebooks from sanbomics

sandiegohearts.github.io

sars-cov-2-rbd_dms

Deep mutational scanning of the receptor-binding domain of SARS-CoV-2 Spike

sars-cov-2-rbd_dms_variants

Deep Mutational Scanning of SARS-CoV-2 Receptor Binding Domain Reveals Constraints on Folding and ACE2 Binding

sarsr-cov_homolog_survey

Survey of ACE2 binding specificities among SARS-related CoV homologs

sbptools

scalex

Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space

scatterplotmatrix

:exclamation: This is a read-only mirror of the CRAN R package repository. scatterPlotMatrix — 'Htmlwidget' for a Scatter Plot Matrix. Homepage: https://ifpen.gitlabfr.com/detocs/scatterplotmatrix Report bugs for this package: https://ifpen.gitlabfr.com/detocs/scatterplotmatrix/-/issues

scdcc

scDCC: Single Cell Deep Constrained Clustering

scde

R package for analyzing single-cell RNA-seq data

scdeepcluster

scDeepCluster for Single Cell RNA-seq data

scdlc

scdrs

Single-cell disease relevance score (scDRS)

scdrs_paper

sceqtl

scgwas

scholar

Analyse citation data from Google Scholar

scholar.py

A parser for Google Scholar, written in Python

scientistnetwork

An idea comes into my mind. To illustrate social network of scientists using R.

scjoint

scJoint integrates atlas-scale single-cell RNA-seq and ATAC-seq data with transfer learning

sclvm

scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources, thereby allowing for the correction of confounding sources of variation.

scraping

Functions for web scraping

screening_protocols_manuscript

Scripts from the Joung et al Nature Protocols 2016 manuscript on knockout and transcriptional activation screening

scrna-seq-and-m6a

Comprehensive Analysis of the Expression of N6-Methyladenosine RNA Methylation Regulators in Pulmonary Artery Hypertension

scrnaseq-bilateral-ptc

Single-Cell Transcriptome Analysis Reveals Inter-Tumor Heterogeneity in Bilateral Papillary Thyroid Carcinoma

scshinyhub

shiny app for single cell RNAseq experiments, with plug-in like structure for flexible integration of tools and visualizations.

scvelo

RNA Velocity generalized through dynamical modeling

scvi-tools

Deep probabilistic analysis of single-cell omics data