Shicheng Guo's Projects
How to establish R workflow in Visual Studio Code
A Swiss-Army Knife for Data I/O
RL-SKAT (Recalibrated Lightweight Sequence Kernel Association Test)
Short reads mapper for next-generation sequencing data (DNA-seq, BS-seq, etc)
Dynamic Documents for R
My scripts for the analysis of RNA-seq data
A quick recap of widely used differential analyses methods in R for RNA-seq experiments
RNA-seq analysis pipeline for detection gene-fusions
A practical guide to build de-novo transcriptome assemblies for non-model organisms (described in Montero-Mendieta et al. 2017).
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
A proof of concept of RNAseq pipeline
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/RnBeads.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=RnBeads.
Very basic Python 3 script computing and displaying ROC properties (curve, AUC) from MOE docking database in .txt format
Tools for extracting and processing Pubmed and Pubmed Central records.
Robust Region-Based Rare-Variant Test
Manual for RStudio Server
Regression with Summary Statistics.
Integrative analysis of complex trait GWAS and gene regulatory network.
Pipe-friendly Framework for Basic Statistical Tests in R