shicheng-guo Goto Github PK

rinvsc

How to establish R workflow in Visual Studio Code

rio

A Swiss-Army Knife for Data I/O

rl-skat

RL-SKAT (Recalibrated Lightweight Sequence Kernel Association Test)

rmap

Short reads mapper for next-generation sequencing data (DNA-seq, BS-seq, etc)

rmarkdown

Dynamic Documents for R

rna-seq

My scripts for the analysis of RNA-seq data

rna-seq-differential-analyses-guideline

A quick recap of widely used differential analyses methods in R for RNA-seq experiments

rna-seq-pipeline

rnafold

rnafusion

RNA-seq analysis pipeline for detection gene-fusions

rnaseq

A practical guide to build de-novo transcriptome assemblies for non-model organisms (described in Montero-Mendieta et al. 2017).

rnaseq-1

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

rnaseq-downstream

rnaseq-nf

A proof of concept of RNAseq pipeline

rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

rnaseqbacterial

rnaseqdataanalysis

rnbeads

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/RnBeads.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=RnBeads.

rnbp

robnorm

robustskat

roc-calculator-for-moe-docking

Very basic Python 3 script computing and displaying ROC properties (curve, AUC) from MOE docking database in .txt format

rpubmed

Tools for extracting and processing Pubmed and Pubmed Central records.

rrrvt

Robust Region-Based Rare-Variant Test

rscript

rserver-manual

Manual for RStudio Server

rss

Regression with Summary Statistics.

rss-net

Integrative analysis of complex trait GWAS and gene regulatory network.

rstatix

Pipe-friendly Framework for Basic Statistical Tests in R

rtcgatoolbox